Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f19
         (315 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    20   5.4  
DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    20   7.1  
AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    19   9.4  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 20.2 bits (40), Expect = 5.4
 Identities = 9/40 (22%), Positives = 21/40 (52%)
 Frame = +1

Query: 97  FVE*LYKCASSMLVLFETPAGYAIFKLLDESKLSEIDNLY 216
           +V  LY+  ++M+ +     G+ +  +L +   S + +LY
Sbjct: 205 YVGTLYRILTTMMEMVNDIFGWTLILILAKCITSSLSSLY 244


>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 19.8 bits (39), Expect = 7.1
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 163 HSPPVSRIEPTYWKHTYTTIQ 101
           +SPP S  +P Y  + Y  +Q
Sbjct: 27  YSPPPSYCDPWYNPYYYQYLQ 47


>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 19.4 bits (38), Expect = 9.4
 Identities = 8/31 (25%), Positives = 16/31 (51%)
 Frame = -3

Query: 121 HTYTTIQQIQSVSFNILSFIRKILSLTNTTL 29
           HT  T+ +    +F+ ++F+R +    N  L
Sbjct: 389 HTVKTVLKTTMSTFSDITFMRTVWKFFNIFL 419


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,667
Number of Sequences: 336
Number of extensions: 1159
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 49
effective length of database: 106,121
effective search space used:  5836655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)