Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f19
         (315 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb...    51   5e-08
SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi...    26   1.2  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    26   1.5  
SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe...    25   3.6  
SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac...    25   3.6  
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po...    25   3.6  
SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos...    24   6.3  
SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy...    23   8.3  

>SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 50.8 bits (116), Expect = 5e-08
 Identities = 26/51 (50%), Positives = 34/51 (66%)
 Frame = +1

Query: 130 MLVLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFE 282
           M +L ET AGYAIFK  D+  L + D L  +  +PEGAS ++KL +F KFE
Sbjct: 1   MFILTETAAGYAIFKAKDKL-LKKRDALIEDLKSPEGASNLLKLQSFAKFE 50


>SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 624

 Score = 26.2 bits (55), Expect = 1.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 115 YTTIQQIQSVSFNILSFIRKILSLTNTTLPRRCRS 11
           YT++  I S +FN   F RK     N  LP +  S
Sbjct: 231 YTSVASISSPTFNYDYFARKAFLTRNKPLPEKTGS 265


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 177  QLKYGIARRCLE*NQHTGSTLIQLFNKYNQYH 82
            Q+ YG+++      +  G+T +Q FN+Y   H
Sbjct: 921  QIAYGVSKFFTSLTRALGNTSVQDFNEYKMIH 952


>SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 264

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 98  LLNSCISVLPVCWFYSRHRRAMPYLS 175
           LL SC+ + P  W Y+  ++    LS
Sbjct: 229 LLTSCLIIFPSIWIYAIEKKNFKNLS 254


>SPBC31F10.14c |hip3|hir3|HIRA interacting protein
            Hip3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1630

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +1

Query: 133  LVLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFV 273
            L L E    Y    LLDE KLS +  +Y       G    +K+ +F+
Sbjct: 1471 LPLVEFKYVYKEISLLDEQKLSLLHQVYEIRKLNNGLYPTIKVDDFL 1517


>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 547

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = +1

Query: 151 PAGYAIFKLLDESKLSEIDNLYXE---FNTPEGASTVVKLXN 267
           P G  +F++LDE    +  N++ E   FN  E  S  ++L N
Sbjct: 491 PEGVEVFEILDEMFFQQFTNVFGESKHFN-KENVSWALQLVN 531


>SPBC11B10.05c |rsp1||random septum position protein
           Rsp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 494

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = -1

Query: 138 NQHTGSTLIQLFNKYNQYHL 79
           N   GS  IQLF  Y Q HL
Sbjct: 456 NWKEGSQAIQLFYAYEQMHL 475


>SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 541

 Score = 23.4 bits (48), Expect = 8.3
 Identities = 11/54 (20%), Positives = 23/54 (42%)
 Frame = -1

Query: 312 SSGCQSFCCXXXXXXXXXXXHCGSPFWSVKFXVQVVNLTQLRLIQQLKYGIARR 151
           ++ C++FC            H    +W +   +++VN   +    ++ YGI  R
Sbjct: 194 ATSCRTFC--GYYISDDAIKHIADEYWKITAAMELVNFPIVLPFTKVWYGIQSR 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,091,759
Number of Sequences: 5004
Number of extensions: 17902
Number of successful extensions: 47
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 46
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 83936266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)