BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f19 (315 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 51 5e-08 SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schi... 26 1.2 SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 1.5 SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe... 25 3.6 SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosac... 25 3.6 SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 25 3.6 SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizos... 24 6.3 SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomy... 23 8.3 >SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pombe|chr 1|||Manual Length = 508 Score = 50.8 bits (116), Expect = 5e-08 Identities = 26/51 (50%), Positives = 34/51 (66%) Frame = +1 Query: 130 MLVLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFE 282 M +L ET AGYAIFK D+ L + D L + +PEGAS ++KL +F KFE Sbjct: 1 MFILTETAAGYAIFKAKDKL-LKKRDALIEDLKSPEGASNLLKLQSFAKFE 50 >SPAC343.19 ||SPAC824.01|phosphatidylinositol 4-kinase Lsb6 |Schizosaccharomyces pombe|chr 1|||Manual Length = 624 Score = 26.2 bits (55), Expect = 1.2 Identities = 13/35 (37%), Positives = 17/35 (48%) Frame = -3 Query: 115 YTTIQQIQSVSFNILSFIRKILSLTNTTLPRRCRS 11 YT++ I S +FN F RK N LP + S Sbjct: 231 YTSVASISSPTFNYDYFARKAFLTRNKPLPEKTGS 265 >SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1|||Manual Length = 3227 Score = 25.8 bits (54), Expect = 1.5 Identities = 10/32 (31%), Positives = 18/32 (56%) Frame = -1 Query: 177 QLKYGIARRCLE*NQHTGSTLIQLFNKYNQYH 82 Q+ YG+++ + G+T +Q FN+Y H Sbjct: 921 QIAYGVSKFFTSLTRALGNTSVQDFNEYKMIH 952 >SPAC11H11.02c |mug162||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 264 Score = 24.6 bits (51), Expect = 3.6 Identities = 9/26 (34%), Positives = 14/26 (53%) Frame = +2 Query: 98 LLNSCISVLPVCWFYSRHRRAMPYLS 175 LL SC+ + P W Y+ ++ LS Sbjct: 229 LLTSCLIIFPSIWIYAIEKKNFKNLS 254 >SPBC31F10.14c |hip3|hir3|HIRA interacting protein Hip3|Schizosaccharomyces pombe|chr 2|||Manual Length = 1630 Score = 24.6 bits (51), Expect = 3.6 Identities = 15/47 (31%), Positives = 21/47 (44%) Frame = +1 Query: 133 LVLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFV 273 L L E Y LLDE KLS + +Y G +K+ +F+ Sbjct: 1471 LPLVEFKYVYKEISLLDEQKLSLLHQVYEIRKLNNGLYPTIKVDDFL 1517 >SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces pombe|chr 2|||Manual Length = 547 Score = 24.6 bits (51), Expect = 3.6 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = +1 Query: 151 PAGYAIFKLLDESKLSEIDNLYXE---FNTPEGASTVVKLXN 267 P G +F++LDE + N++ E FN E S ++L N Sbjct: 491 PEGVEVFEILDEMFFQQFTNVFGESKHFN-KENVSWALQLVN 531 >SPBC11B10.05c |rsp1||random septum position protein Rsp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 494 Score = 23.8 bits (49), Expect = 6.3 Identities = 11/20 (55%), Positives = 11/20 (55%) Frame = -1 Query: 138 NQHTGSTLIQLFNKYNQYHL 79 N GS IQLF Y Q HL Sbjct: 456 NWKEGSQAIQLFYAYEQMHL 475 >SPAC19A8.04 |erg5||C-22 sterol desaturase Erg5 |Schizosaccharomyces pombe|chr 1|||Manual Length = 541 Score = 23.4 bits (48), Expect = 8.3 Identities = 11/54 (20%), Positives = 23/54 (42%) Frame = -1 Query: 312 SSGCQSFCCXXXXXXXXXXXHCGSPFWSVKFXVQVVNLTQLRLIQQLKYGIARR 151 ++ C++FC H +W + +++VN + ++ YGI R Sbjct: 194 ATSCRTFC--GYYISDDAIKHIADEYWKITAAMELVNFPIVLPFTKVWYGIQSR 245 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,091,759 Number of Sequences: 5004 Number of extensions: 17902 Number of successful extensions: 47 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 46 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 46 length of database: 2,362,478 effective HSP length: 63 effective length of database: 2,047,226 effective search space used: 83936266 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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