Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f19
(315 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 67 3e-12
03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 67 3e-12
12_02_1165 + 26633371-26633679,26635183-26635276,26635732-266358... 34 0.027
12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 30 0.33
10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 29 0.58
11_01_0320 - 2406706-2406943,2407297-2407385,2407463-2408335,240... 27 3.1
08_01_0069 - 483701-483997,484113-484325,484548-484727,484815-48... 27 3.1
01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380... 27 3.1
04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108 26 7.1
12_01_0022 + 165056-165408,165477-165624,166248-166248,166305-16... 25 9.4
06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233... 25 9.4
02_05_0731 + 31299466-31299643,31300369-31300673,31300992-31301660 25 9.4
>03_02_0999 -
13105030-13105434,13105716-13105850,13105933-13106133,
13106374-13106673,13106764-13106964,13107246-13107410,
13107484-13107663,13108171-13108212,13108327-13108404
Length = 568
Score = 66.9 bits (156), Expect = 3e-12
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = +1
Query: 130 MLVLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFED 285
MLVLFETPAG+A+FK+LDE KL ++++L+ EF T + A VV+L F KFE+
Sbjct: 1 MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFEN 52
>03_02_0998 -
13097675-13098079,13098307-13098441,13098522-13098722,
13099060-13099359,13099449-13099649,13099932-13100096,
13100170-13100349,13100896-13100937,13101040-13101117
Length = 568
Score = 66.9 bits (156), Expect = 3e-12
Identities = 30/52 (57%), Positives = 41/52 (78%)
Frame = +1
Query: 130 MLVLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFED 285
MLVLFETPAG+A+FK+LDE KL ++++L+ EF T + A VV+L F KFE+
Sbjct: 1 MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFEN 52
>12_02_1165 +
26633371-26633679,26635183-26635276,26635732-26635822,
26636112-26636199,26636300-26636341,26636648-26636809,
26636915-26637094,26637280-26637447,26637977-26638195
Length = 450
Score = 33.9 bits (74), Expect = 0.027
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +1
Query: 136 VLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFED 285
+LFETP+G+A+F++ D ++++ F P A VV+ F++ D
Sbjct: 172 MLFETPSGFAMFRVSD-VLFRYPEDIWSSFTDPHTAHQVVRTIGFIEVGD 220
>12_01_1116 +
11914352-11914415,11915049-11915158,11915254-11915295,
11916263-11916430,11916506-11916682,11916848-11917051,
11917125-11917319
Length = 319
Score = 30.3 bits (65), Expect = 0.33
Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Frame = +1
Query: 112 YKCASSMLVLFETPAGYAIFKLLDESKL--SEIDNLYXEFNTPEGASTVVKLXNFVKFED 285
Y C +LVLFETP+G+A+F + + + + + ++ F S + L F + +D
Sbjct: 26 YHCLI-VLVLFETPSGFAMFGMSGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKD 84
>10_08_0570 +
18851451-18851723,18851894-18851928,18851929-18851998,
18852089-18852187,18852276-18852365,18852430-18852920,
18853015-18853102,18853204-18853245,18853548-18853574,
18853817-18853996,18854249-18854416,18854501-18854710
Length = 590
Score = 29.5 bits (63), Expect = 0.58
Identities = 13/47 (27%), Positives = 26/47 (55%)
Frame = +1
Query: 136 VLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVK 276
+LFETP+G+ +F++ D ++++ F P A V+ F++
Sbjct: 360 MLFETPSGFVMFRVSD-VLFRYPEDIWSSFTDPRTAHQAVRTIGFIE 405
>11_01_0320 -
2406706-2406943,2407297-2407385,2407463-2408335,
2408882-2409310
Length = 542
Score = 27.1 bits (57), Expect = 3.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 208 NLYXEFNTPEGASTVVKLXNFVKFED 285
NLY F+ GA+ VV L ++ +FE+
Sbjct: 337 NLYYSFDAAGGAAHVVMLGSYAEFEE 362
>08_01_0069 -
483701-483997,484113-484325,484548-484727,484815-484985,
485655-485764,485914-485989
Length = 348
Score = 27.1 bits (57), Expect = 3.1
Identities = 10/14 (71%), Positives = 13/14 (92%)
Frame = +1
Query: 130 MLVLFETPAGYAIF 171
+LVLFETP G+A+F
Sbjct: 35 ILVLFETPTGFALF 48
>01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,
3807118-3807282,3807363-3807657,3807739-3807953,
3808125-3808430,3808539-3808602,3808735-3808974,
3809150-3809253
Length = 1493
Score = 27.1 bits (57), Expect = 3.1
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Frame = -1
Query: 237 FWSVKFXVQVVNLTQLRLIQQLKYGIARRCLE*NQHTGSTLIQLFNKYNQY-----HLIY 73
FW ++ + Q RL+ K I + E TGST I+ F K NQ+ HL+
Sbjct: 1083 FWYQRYYIDTARELQ-RLVGVCKAPIIQHFAE--SITGSTTIRSFGKENQFVSTNSHLMD 1139
Query: 72 *VSSEKYYH 46
S K+Y+
Sbjct: 1140 AFSRPKFYN 1148
>04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108
Length = 510
Score = 25.8 bits (54), Expect = 7.1
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +1
Query: 109 LYKCASSMLV-LFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVV 255
LY C SSMLV + P+ AI L E+ + EI + + T ST+V
Sbjct: 287 LYSCGSSMLVKIGRAPSLRAIGYLDLETHVLEIGDTIIKAGTRASPSTMV 336
>12_01_0022 +
165056-165408,165477-165624,166248-166248,166305-166602,
166819-167387,167554-168377
Length = 730
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%)
Frame = -1
Query: 171 KYGIARRCLE*NQHTGSTLIQLF----NKYNQYHLI 76
+Y I+ C E H STLI LF NKY Y ++
Sbjct: 351 RYCISHECKEDVLHHLSTLIVLFNPDQNKYENYKIV 386
>06_03_0697 -
23621808-23622127,23622194-23622932,23623298-23623327,
23624183-23624200,23625176-23625268,23625665-23626123
Length = 552
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = -3
Query: 286 CPQTLQSSX-TXPLWKPLLEC*ILGTSCQSHSA*THPAT*IW-HSPPVSRIEPTYWKH 119
C Q +QS+ + P++ +L SC + + A+ ++ S P ++PT+W+H
Sbjct: 421 CNQVIQSNAFSLSSSFPIIGDDLLENSCHAFVGINNNASSLFLDSQPPPLVDPTFWRH 478
>02_05_0731 + 31299466-31299643,31300369-31300673,31300992-31301660
Length = 383
Score = 25.4 bits (53), Expect = 9.4
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = -3
Query: 166 WHSPPVSRIEPTYWKHTYTTIQQIQSVSFNILSFIRKILSLT 41
W SPP+S Y T Q+ Q S N S + +S T
Sbjct: 185 WVSPPLSSTNEAYTAPVSQTTQRSQHTSDNTSSVMTDAISST 226
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,802,384
Number of Sequences: 37544
Number of extensions: 107660
Number of successful extensions: 179
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 386885760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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