BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f19 (315 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 03_02_0999 - 13105030-13105434,13105716-13105850,13105933-131061... 67 3e-12 03_02_0998 - 13097675-13098079,13098307-13098441,13098522-130987... 67 3e-12 12_02_1165 + 26633371-26633679,26635183-26635276,26635732-266358... 34 0.027 12_01_1116 + 11914352-11914415,11915049-11915158,11915254-119152... 30 0.33 10_08_0570 + 18851451-18851723,18851894-18851928,18851929-188519... 29 0.58 11_01_0320 - 2406706-2406943,2407297-2407385,2407463-2408335,240... 27 3.1 08_01_0069 - 483701-483997,484113-484325,484548-484727,484815-48... 27 3.1 01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035,380... 27 3.1 04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108 26 7.1 12_01_0022 + 165056-165408,165477-165624,166248-166248,166305-16... 25 9.4 06_03_0697 - 23621808-23622127,23622194-23622932,23623298-236233... 25 9.4 02_05_0731 + 31299466-31299643,31300369-31300673,31300992-31301660 25 9.4 >03_02_0999 - 13105030-13105434,13105716-13105850,13105933-13106133, 13106374-13106673,13106764-13106964,13107246-13107410, 13107484-13107663,13108171-13108212,13108327-13108404 Length = 568 Score = 66.9 bits (156), Expect = 3e-12 Identities = 30/52 (57%), Positives = 41/52 (78%) Frame = +1 Query: 130 MLVLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFED 285 MLVLFETPAG+A+FK+LDE KL ++++L+ EF T + A VV+L F KFE+ Sbjct: 1 MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFEN 52 >03_02_0998 - 13097675-13098079,13098307-13098441,13098522-13098722, 13099060-13099359,13099449-13099649,13099932-13100096, 13100170-13100349,13100896-13100937,13101040-13101117 Length = 568 Score = 66.9 bits (156), Expect = 3e-12 Identities = 30/52 (57%), Positives = 41/52 (78%) Frame = +1 Query: 130 MLVLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFED 285 MLVLFETPAG+A+FK+LDE KL ++++L+ EF T + A VV+L F KFE+ Sbjct: 1 MLVLFETPAGFALFKVLDEGKLDKVEDLWKEFTTSDSARKVVELKAFNKFEN 52 >12_02_1165 + 26633371-26633679,26635183-26635276,26635732-26635822, 26636112-26636199,26636300-26636341,26636648-26636809, 26636915-26637094,26637280-26637447,26637977-26638195 Length = 450 Score = 33.9 bits (74), Expect = 0.027 Identities = 16/50 (32%), Positives = 29/50 (58%) Frame = +1 Query: 136 VLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFED 285 +LFETP+G+A+F++ D ++++ F P A VV+ F++ D Sbjct: 172 MLFETPSGFAMFRVSD-VLFRYPEDIWSSFTDPHTAHQVVRTIGFIEVGD 220 >12_01_1116 + 11914352-11914415,11915049-11915158,11915254-11915295, 11916263-11916430,11916506-11916682,11916848-11917051, 11917125-11917319 Length = 319 Score = 30.3 bits (65), Expect = 0.33 Identities = 17/60 (28%), Positives = 31/60 (51%), Gaps = 2/60 (3%) Frame = +1 Query: 112 YKCASSMLVLFETPAGYAIFKLLDESKL--SEIDNLYXEFNTPEGASTVVKLXNFVKFED 285 Y C +LVLFETP+G+A+F + + + + + ++ F S + L F + +D Sbjct: 26 YHCLI-VLVLFETPSGFAMFGMSGDRLIQPNALQEIWANFGVDYRVSKFIWLKEFREIKD 84 >10_08_0570 + 18851451-18851723,18851894-18851928,18851929-18851998, 18852089-18852187,18852276-18852365,18852430-18852920, 18853015-18853102,18853204-18853245,18853548-18853574, 18853817-18853996,18854249-18854416,18854501-18854710 Length = 590 Score = 29.5 bits (63), Expect = 0.58 Identities = 13/47 (27%), Positives = 26/47 (55%) Frame = +1 Query: 136 VLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVK 276 +LFETP+G+ +F++ D ++++ F P A V+ F++ Sbjct: 360 MLFETPSGFVMFRVSD-VLFRYPEDIWSSFTDPRTAHQAVRTIGFIE 405 >11_01_0320 - 2406706-2406943,2407297-2407385,2407463-2408335, 2408882-2409310 Length = 542 Score = 27.1 bits (57), Expect = 3.1 Identities = 11/26 (42%), Positives = 17/26 (65%) Frame = +1 Query: 208 NLYXEFNTPEGASTVVKLXNFVKFED 285 NLY F+ GA+ VV L ++ +FE+ Sbjct: 337 NLYYSFDAAGGAAHVVMLGSYAEFEE 362 >08_01_0069 - 483701-483997,484113-484325,484548-484727,484815-484985, 485655-485764,485914-485989 Length = 348 Score = 27.1 bits (57), Expect = 3.1 Identities = 10/14 (71%), Positives = 13/14 (92%) Frame = +1 Query: 130 MLVLFETPAGYAIF 171 +LVLFETP G+A+F Sbjct: 35 ILVLFETPTGFALF 48 >01_01_0517 + 3803740-3806106,3806226-3806312,3806397-3807035, 3807118-3807282,3807363-3807657,3807739-3807953, 3808125-3808430,3808539-3808602,3808735-3808974, 3809150-3809253 Length = 1493 Score = 27.1 bits (57), Expect = 3.1 Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 5/69 (7%) Frame = -1 Query: 237 FWSVKFXVQVVNLTQLRLIQQLKYGIARRCLE*NQHTGSTLIQLFNKYNQY-----HLIY 73 FW ++ + Q RL+ K I + E TGST I+ F K NQ+ HL+ Sbjct: 1083 FWYQRYYIDTARELQ-RLVGVCKAPIIQHFAE--SITGSTTIRSFGKENQFVSTNSHLMD 1139 Query: 72 *VSSEKYYH 46 S K+Y+ Sbjct: 1140 AFSRPKFYN 1148 >04_01_0565 - 7227326-7227739,7227872-7228015,7228134-7229108 Length = 510 Score = 25.8 bits (54), Expect = 7.1 Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%) Frame = +1 Query: 109 LYKCASSMLV-LFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVV 255 LY C SSMLV + P+ AI L E+ + EI + + T ST+V Sbjct: 287 LYSCGSSMLVKIGRAPSLRAIGYLDLETHVLEIGDTIIKAGTRASPSTMV 336 >12_01_0022 + 165056-165408,165477-165624,166248-166248,166305-166602, 166819-167387,167554-168377 Length = 730 Score = 25.4 bits (53), Expect = 9.4 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 4/36 (11%) Frame = -1 Query: 171 KYGIARRCLE*NQHTGSTLIQLF----NKYNQYHLI 76 +Y I+ C E H STLI LF NKY Y ++ Sbjct: 351 RYCISHECKEDVLHHLSTLIVLFNPDQNKYENYKIV 386 >06_03_0697 - 23621808-23622127,23622194-23622932,23623298-23623327, 23624183-23624200,23625176-23625268,23625665-23626123 Length = 552 Score = 25.4 bits (53), Expect = 9.4 Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 2/58 (3%) Frame = -3 Query: 286 CPQTLQSSX-TXPLWKPLLEC*ILGTSCQSHSA*THPAT*IW-HSPPVSRIEPTYWKH 119 C Q +QS+ + P++ +L SC + + A+ ++ S P ++PT+W+H Sbjct: 421 CNQVIQSNAFSLSSSFPIIGDDLLENSCHAFVGINNNASSLFLDSQPPPLVDPTFWRH 478 >02_05_0731 + 31299466-31299643,31300369-31300673,31300992-31301660 Length = 383 Score = 25.4 bits (53), Expect = 9.4 Identities = 14/42 (33%), Positives = 18/42 (42%) Frame = -3 Query: 166 WHSPPVSRIEPTYWKHTYTTIQQIQSVSFNILSFIRKILSLT 41 W SPP+S Y T Q+ Q S N S + +S T Sbjct: 185 WVSPPLSSTNEAYTAPVSQTTQRSQHTSDNTSSVMTDAISST 226 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,802,384 Number of Sequences: 37544 Number of extensions: 107660 Number of successful extensions: 179 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 178 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 179 length of database: 14,793,348 effective HSP length: 72 effective length of database: 12,090,180 effective search space used: 386885760 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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