Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f19
         (315 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical ...    60   4e-10
U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis def...    27   3.8  
U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis def...    27   3.8  
AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin c-t...    27   3.8  
U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily ass...    26   5.0  
U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily ass...    26   5.0  
U20864-4|AAC46664.2|  304|Caenorhabditis elegans Aquaporin or aq...    26   6.6  

>AF043704-1|AAK21475.1|  487|Caenorhabditis elegans Hypothetical
           protein W01B11.3 protein.
          Length = 487

 Score = 59.7 bits (138), Expect = 4e-10
 Identities = 27/51 (52%), Positives = 37/51 (72%)
 Frame = +1

Query: 130 MLVLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFE 282
           MLVLFE  AGYA+FKL +E KL  +DN++ EF+T E A   ++L +F KF+
Sbjct: 1   MLVLFEVAAGYAVFKLSNEKKLKNVDNIWEEFSTAEKAQENLQLVSFKKFK 51


>U50193-6|AAL32262.1| 1175|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoforma protein.
          Length = 1175

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 172 KLLDESKLSEIDNLYXEFNTPEGASTVVKLXN 267
           KLL + +LS   N+Y + N PE   TV K  N
Sbjct: 229 KLLSDEELS---NMYKDLNVPEEHQTVTKSSN 257


>U50193-5|AAL32263.1| 1178|Caenorhabditis elegans Cytokinesis defect
           protein 3, isoformb protein.
          Length = 1178

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 172 KLLDESKLSEIDNLYXEFNTPEGASTVVKLXN 267
           KLL + +LS   N+Y + N PE   TV K  N
Sbjct: 229 KLLSDEELS---NMYKDLNVPEEHQTVTKSSN 257


>AF469173-1|AAL79016.1| 1175|Caenorhabditis elegans ubiquitin
           c-terminal hydrolase protein.
          Length = 1175

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +1

Query: 172 KLLDESKLSEIDNLYXEFNTPEGASTVVKLXN 267
           KLL + +LS   N+Y + N PE   TV K  N
Sbjct: 229 KLLSDEELS---NMYKDLNVPEEHQTVTKSSN 257


>U23168-3|AAU87831.1| 4034|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform b protein.
          Length = 4034

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 136  VLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFE 282
            VL  TPA     + L E   SE+   +   ++ E AS V++    VK++
Sbjct: 2883 VLLGTPASQVFTRNLQEPIQSEVQGFWSTNSSQEKASLVIRQKLNVKYD 2931


>U23168-1|AAU87832.1| 7548|Caenorhabditis elegans Temporarily assigned
            gene nameprotein 308, isoform c protein.
          Length = 7548

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = +1

Query: 136  VLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFE 282
            VL  TPA     + L E   SE+   +   ++ E AS V++    VK++
Sbjct: 2883 VLLGTPASQVFTRNLQEPIQSEVQGFWSTNSSQEKASLVIRQKLNVKYD 2931


>U20864-4|AAC46664.2|  304|Caenorhabditis elegans Aquaporin or
          aquaglyceroporin relatedprotein 1, isoform a protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 76 ILSFIRKILSLTNTTLPRRCR 14
          +L FIRKI++    TLP R R
Sbjct: 2  LLRFIRKIMTAEEDTLPERLR 22


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,052,134
Number of Sequences: 27780
Number of extensions: 100740
Number of successful extensions: 215
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 355337994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)