Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f19
         (315 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    23   0.66 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    23   0.87 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    23   0.87 
AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    20   8.1  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 0.66
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = -3

Query: 289 LCPQTLQSSXTXPLWKPLLEC 227
           LCP TL+     P   P+ EC
Sbjct: 454 LCPYTLKHKIRVPPGTPIYEC 474


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -3

Query: 148 SRIEPTYWKHTYTTIQQI 95
           ++++PTY+ HTY   + +
Sbjct: 33  TKLQPTYFHHTYIIYESL 50


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 23.0 bits (47), Expect = 0.87
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = -3

Query: 148 SRIEPTYWKHTYTTIQQI 95
           ++++PTY+ HTY   + +
Sbjct: 33  TKLQPTYFHHTYIIYESL 50


>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 19.8 bits (39), Expect = 8.1
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = -1

Query: 105 FNKYNQYHLIY*VSSEKYYH*QTQLYRVAVGQP 7
           +N YN Y+  Y  + +K Y+    + ++ V  P
Sbjct: 334 YNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVP 366


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 71,926
Number of Sequences: 438
Number of extensions: 1293
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6719922
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)