BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f19 (315 letters) Database: bee 438 sequences; 146,343 total letters Searching......................................................done Score E Sequences producing significant alignments: (bits) Value AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methylt... 23 0.66 DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 0.87 DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 0.87 AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex det... 20 8.1 >AM050259-1|CAJ18340.1| 683|Apis mellifera putative H3K9 methyltransferase protein. Length = 683 Score = 23.4 bits (48), Expect = 0.66 Identities = 9/21 (42%), Positives = 11/21 (52%) Frame = -3 Query: 289 LCPQTLQSSXTXPLWKPLLEC 227 LCP TL+ P P+ EC Sbjct: 454 LCPYTLKHKIRVPPGTPIYEC 474 >DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 23.0 bits (47), Expect = 0.87 Identities = 6/18 (33%), Positives = 13/18 (72%) Frame = -3 Query: 148 SRIEPTYWKHTYTTIQQI 95 ++++PTY+ HTY + + Sbjct: 33 TKLQPTYFHHTYIIYESL 50 >DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine receptor alpha6subunit protein. Length = 529 Score = 23.0 bits (47), Expect = 0.87 Identities = 6/18 (33%), Positives = 13/18 (72%) Frame = -3 Query: 148 SRIEPTYWKHTYTTIQQI 95 ++++PTY+ HTY + + Sbjct: 33 TKLQPTYFHHTYIIYESL 50 >AY350618-1|AAQ57660.1| 425|Apis mellifera complementary sex determiner protein. Length = 425 Score = 19.8 bits (39), Expect = 8.1 Identities = 9/33 (27%), Positives = 17/33 (51%) Frame = -1 Query: 105 FNKYNQYHLIY*VSSEKYYH*QTQLYRVAVGQP 7 +N YN Y+ Y + +K Y+ + ++ V P Sbjct: 334 YNNYNNYNNNYNNNYKKLYYNINYIEQIPVPVP 366 Database: bee Posted date: Oct 23, 2007 1:17 PM Number of letters in database: 146,343 Number of sequences in database: 438 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 71,926 Number of Sequences: 438 Number of extensions: 1293 Number of successful extensions: 4 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 4 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4 length of database: 146,343 effective HSP length: 50 effective length of database: 124,443 effective search space used: 6719922 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 38 (20.3 bits)
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