Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f19
         (315 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g27120.1 68418.m03237 SAR DNA-binding protein, putative stron...    60   2e-10
At3g05060.1 68416.m00549 SAR DNA-binding protein, putative stron...    59   5e-10
At5g27140.1 68418.m03239 SAR DNA-binding protein, putative stron...    49   6e-07
At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl...    26   6.1  
At3g13380.1 68416.m01683 leucine-rich repeat family protein / pr...    25   8.1  
At3g11040.1 68416.m01332 glycosyl hydrolase family 85 protein co...    25   8.1  
At2g07505.1 68415.m00868 hypothetical protein  and genefinder          25   8.1  

>At5g27120.1 68418.m03237 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 60.5 bits (140), Expect = 2e-10
 Identities = 28/52 (53%), Positives = 40/52 (76%)
 Frame = +1

Query: 130 MLVLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFED 285
           ML+LFETP G+AIFK+L+E KLS +++L  EF+T + A  +VKL  F KF++
Sbjct: 1   MLILFETPGGFAIFKVLNEGKLSNVEDLGNEFSTAKLARKMVKLVAFDKFDN 52


>At3g05060.1 68416.m00549 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 533

 Score = 59.3 bits (137), Expect = 5e-10
 Identities = 25/52 (48%), Positives = 40/52 (76%)
 Frame = +1

Query: 130 MLVLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVKFED 285
           +LVL+ET AG+A+FK+ DE K++ +++L  EF+TP+ A  +VKL  F KF++
Sbjct: 2   VLVLYETAAGFALFKVKDEGKMANVEDLCKEFDTPDSARKMVKLKAFEKFDN 53


>At5g27140.1 68418.m03239 SAR DNA-binding protein, putative strong
           similarity to SAR DNA-binding protein-1 [Pisum sativum]
           GI:3132696; contains Pfam profile PF01798: Putative
           snoRNA binding domain
          Length = 445

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 25/49 (51%), Positives = 34/49 (69%)
 Frame = +1

Query: 130 MLVLFETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGASTVVKLXNFVK 276
           MLVLFET  G+A+FK+LDE KLS +++L  EF + E A   + L  F+K
Sbjct: 1   MLVLFETSGGFALFKVLDEGKLSNVEDLGTEFYSAESARR-MGLHKFLK 48


>At2g19450.1 68415.m02272 diacylglycerol O-acyltransferase / acyl
           CoA:diacylglycerol acyltransferase (DGAT) identical to
           gi:5050913, gi:6625553
          Length = 520

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 16/36 (44%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
 Frame = +2

Query: 134 WFYSRHRRAMPYLSCWMSLS*VRLTTCT-XNLTLQK 238
           WF SR  R  P   C +SLS   L   T   L LQK
Sbjct: 167 WFSSRSLRDWPLFMCCISLSIFPLAAFTVEKLVLQK 202


>At3g13380.1 68416.m01683 leucine-rich repeat family protein /
           protein kinase family protein contains Pfam domains
           PF00560: Leucine Rich Repeat and PF00069: Protein kinase
           domain
          Length = 1164

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +1

Query: 187 SKLSEIDNLYXEFNTPEGASTVVKLXN 267
           SKLS I NLY  FN   G S  + L N
Sbjct: 348 SKLSRITNLYLPFNNISG-SVPISLTN 373


>At3g11040.1 68416.m01332 glycosyl hydrolase family 85 protein
           contains similarity to endo-b-N-acetylglucosaminidase
           GI:13774138 from [Mucor hiemalis]
          Length = 701

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 8/32 (25%), Positives = 18/32 (56%)
 Frame = +2

Query: 92  LYLLNSCISVLPVCWFYSRHRRAMPYLSCWMS 187
           +Y  +S +++ P CW  + HR  +  L  +++
Sbjct: 107 VYFSHSLVTIPPPCWTNTAHRHGVKVLGTFIT 138


>At2g07505.1 68415.m00868 hypothetical protein  and genefinder
          Length = 143

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 15/47 (31%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
 Frame = +1

Query: 145 ETPAGYAIFKLLDESKLSEIDNLYXEFNTPEGAS-TVVKLXNFVKFE 282
           E  +G+ +F+L DE  + E++++  + +  EGAS T+ K    ++FE
Sbjct: 41  ENGSGH-LFRLTDEVMVEEMEDILPKIDELEGASLTLQKGLQALEFE 86


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,550,192
Number of Sequences: 28952
Number of extensions: 89036
Number of successful extensions: 175
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 330493944
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)