BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f17 (360 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 156 8e-40 SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 156 8e-40 SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 156 8e-40 SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 3.5 SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 3.5 SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 4.7 SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 24 6.2 SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 24 6.2 SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 6.2 SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 24 8.2 >SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S ribosomal protein L8|Schizosaccharomyces pombe|chr 1|||Manual Length = 253 Score = 156 bits (379), Expect = 8e-40 Identities = 71/103 (68%), Positives = 86/103 (83%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FR+PY ++T E F+A EG+YTGQFVYCGK A L GNV+P Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLP 102 >SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein L8|Schizosaccharomyces pombe|chr 2|||Manual Length = 253 Score = 156 bits (379), Expect = 8e-40 Identities = 71/103 (68%), Positives = 86/103 (83%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FR+PY ++T E F+A EG+YTGQFVYCGK A L GNV+P Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLP 102 >SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L8|Schizosaccharomyces pombe|chr 2|||Manual Length = 253 Score = 156 bits (379), Expect = 8e-40 Identities = 71/103 (68%), Positives = 86/103 (83%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FR+PY ++T E F+A EG+YTGQFVYCGK A L GNV+P Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLP 102 >SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces pombe|chr 1|||Manual Length = 473 Score = 25.0 bits (52), Expect = 3.5 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%) Frame = -3 Query: 274 ELLP--CLELVWIAEVYNSQGCTSTRVMDYILNNSLD 170 EL+P CLE+ ++V GC + R++D+ + S D Sbjct: 102 ELIPPDCLEVFRNSDVKFYDGCLTVRIIDHRQSPSAD 138 >SPCC645.13 |||transcription elongation regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 721 Score = 25.0 bits (52), Expect = 3.5 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = +2 Query: 71 QRKGAGSVFVSHTKKRKGAPKLRSLD 148 +R+G+ +HTK+ K APK D Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192 >SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a Pol2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 2199 Score = 24.6 bits (51), Expect = 4.7 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = +3 Query: 267 RSSSLLPKGSTQANLFIVE 323 +S+++LP GST LF++E Sbjct: 1353 KSNAILPHGSTSDKLFLLE 1371 >SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 670 Score = 24.2 bits (50), Expect = 6.2 Identities = 12/39 (30%), Positives = 21/39 (53%) Frame = +3 Query: 195 SMTLVEVHPWLLYTSAIHTSSRQGRSSSLLPKGSTQANL 311 SMT + +++S+ H+SS + S SL P + +L Sbjct: 616 SMTTSHLSSSSVHSSSAHSSSSRSSSMSLPPSAGSSTSL 654 >SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr 2|||Manual Length = 467 Score = 24.2 bits (50), Expect = 6.2 Identities = 14/45 (31%), Positives = 23/45 (51%) Frame = +2 Query: 92 VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 226 V+ + ++KGA LD A +H + + + HDP +G LA Sbjct: 254 VYTVASPQKKGAVFRLDLDQATQHTLGRELKRFASHDPHQGWHLA 298 >SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces pombe|chr 3|||Manual Length = 468 Score = 24.2 bits (50), Expect = 6.2 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +1 Query: 238 PRSIQVQDKEGALHCSR 288 PRSI V ++G L C+R Sbjct: 180 PRSILVDSEDGVLRCAR 196 >SPCC18.03 |||shuttle craft like transcriptional regulator|Schizosaccharomyces pombe|chr 3|||Manual Length = 1077 Score = 23.8 bits (49), Expect = 8.2 Identities = 10/21 (47%), Positives = 11/21 (52%) Frame = -2 Query: 113 SSCEKRKLNRHPYAEHVLHDP 51 SSC+K R Y EHV P Sbjct: 725 SSCKKECGKRRMYCEHVCQSP 745 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,425,396 Number of Sequences: 5004 Number of extensions: 26408 Number of successful extensions: 80 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 75 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 77 length of database: 2,362,478 effective HSP length: 65 effective length of database: 2,037,218 effective search space used: 110009772 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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