Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f17
(360 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 156 8e-40
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 156 8e-40
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 156 8e-40
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p... 25 3.5
SPCC645.13 |||transcription elongation regulator|Schizosaccharom... 25 3.5
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni... 25 4.7
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein... 24 6.2
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|... 24 6.2
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 24 6.2
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 24 8.2
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 156 bits (379), Expect = 8e-40
Identities = 71/103 (68%), Positives = 86/103 (83%)
Frame = +2
Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
V FR+PY ++T E F+A EG+YTGQFVYCGK A L GNV+P
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLP 102
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 156 bits (379), Expect = 8e-40
Identities = 71/103 (68%), Positives = 86/103 (83%)
Frame = +2
Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
V FR+PY ++T E F+A EG+YTGQFVYCGK A L GNV+P
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLP 102
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 156 bits (379), Expect = 8e-40
Identities = 71/103 (68%), Positives = 86/103 (83%)
Frame = +2
Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA
Sbjct: 1 MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59
Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
V FR+PY ++T E F+A EG+YTGQFVYCGK A L GNV+P
Sbjct: 60 VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLP 102
>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 473
Score = 25.0 bits (52), Expect = 3.5
Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
Frame = -3
Query: 274 ELLP--CLELVWIAEVYNSQGCTSTRVMDYILNNSLD 170
EL+P CLE+ ++V GC + R++D+ + S D
Sbjct: 102 ELIPPDCLEVFRNSDVKFYDGCLTVRIIDHRQSPSAD 138
>SPCC645.13 |||transcription elongation
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 721
Score = 25.0 bits (52), Expect = 3.5
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +2
Query: 71 QRKGAGSVFVSHTKKRKGAPKLRSLD 148
+R+G+ +HTK+ K APK D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192
>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 2199
Score = 24.6 bits (51), Expect = 4.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 267 RSSSLLPKGSTQANLFIVE 323
+S+++LP GST LF++E
Sbjct: 1353 KSNAILPHGSTSDKLFLLE 1371
>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 24.2 bits (50), Expect = 6.2
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +3
Query: 195 SMTLVEVHPWLLYTSAIHTSSRQGRSSSLLPKGSTQANL 311
SMT + +++S+ H+SS + S SL P + +L
Sbjct: 616 SMTTSHLSSSSVHSSSAHSSSSRSSSMSLPPSAGSSTSL 654
>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 467
Score = 24.2 bits (50), Expect = 6.2
Identities = 14/45 (31%), Positives = 23/45 (51%)
Frame = +2
Query: 92 VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 226
V+ + ++KGA LD A +H + + + HDP +G LA
Sbjct: 254 VYTVASPQKKGAVFRLDLDQATQHTLGRELKRFASHDPHQGWHLA 298
>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 468
Score = 24.2 bits (50), Expect = 6.2
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = +1
Query: 238 PRSIQVQDKEGALHCSR 288
PRSI V ++G L C+R
Sbjct: 180 PRSILVDSEDGVLRCAR 196
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 23.8 bits (49), Expect = 8.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 113 SSCEKRKLNRHPYAEHVLHDP 51
SSC+K R Y EHV P
Sbjct: 725 SSCKKECGKRRMYCEHVCQSP 745
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,396
Number of Sequences: 5004
Number of extensions: 26408
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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