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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f17
         (360 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|...   156   8e-40
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ...   156   8e-40
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L...   156   8e-40
SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces p...    25   3.5  
SPCC645.13 |||transcription elongation regulator|Schizosaccharom...    25   3.5  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   4.7  
SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal protein...    24   6.2  
SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|...    24   6.2  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    24   6.2  
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    24   8.2  

>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
           ribosomal protein L8|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 253

 Score =  156 bits (379), Expect = 8e-40
 Identities = 71/103 (68%), Positives = 86/103 (83%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L  GNV+P
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLP 102


>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  156 bits (379), Expect = 8e-40
 Identities = 71/103 (68%), Positives = 86/103 (83%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L  GNV+P
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLP 102


>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
           L8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 253

 Score =  156 bits (379), Expect = 8e-40
 Identities = 71/103 (68%), Positives = 86/103 (83%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIRAQRK +G +F +HT+ RKGA +LR+LD+AERHGYI+GVV+ IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAK 59

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FR+PY ++T  E F+A EG+YTGQFVYCGK A L  GNV+P
Sbjct: 60  VAFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLP 102


>SPAC4D7.10c |||SAGA complex subunit Spt20 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 473

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 13/37 (35%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = -3

Query: 274 ELLP--CLELVWIAEVYNSQGCTSTRVMDYILNNSLD 170
           EL+P  CLE+   ++V    GC + R++D+  + S D
Sbjct: 102 ELIPPDCLEVFRNSDVKFYDGCLTVRIIDHRQSPSAD 138


>SPCC645.13 |||transcription elongation
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 3.5
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 71  QRKGAGSVFVSHTKKRKGAPKLRSLD 148
           +R+G+     +HTK+ K APK    D
Sbjct: 167 KRRGSVGTTATHTKRSKNAPKTSPKD 192


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
            Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 4.7
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 267  RSSSLLPKGSTQANLFIVE 323
            +S+++LP GST   LF++E
Sbjct: 1353 KSNAILPHGSTSDKLFLLE 1371


>SPAC19G12.16c |adg2|SPAC23A1.01c, mug46|conserved fungal
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +3

Query: 195 SMTLVEVHPWLLYTSAIHTSSRQGRSSSLLPKGSTQANL 311
           SMT   +    +++S+ H+SS +  S SL P   +  +L
Sbjct: 616 SMTTSHLSSSSVHSSSAHSSSSRSSSMSLPPSAGSSTSL 654


>SPBC3H7.06c |pof9||F-box protein Paf9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 467

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 92  VFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 226
           V+   + ++KGA     LD A +H   + + +   HDP +G  LA
Sbjct: 254 VYTVASPQKKGAVFRLDLDQATQHTLGRELKRFASHDPHQGWHLA 298


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 24.2 bits (50), Expect = 6.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 238 PRSIQVQDKEGALHCSR 288
           PRSI V  ++G L C+R
Sbjct: 180 PRSILVDSEDGVLRCAR 196


>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 23.8 bits (49), Expect = 8.2
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -2

Query: 113 SSCEKRKLNRHPYAEHVLHDP 51
           SSC+K    R  Y EHV   P
Sbjct: 725 SSCKKECGKRRMYCEHVCQSP 745


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,425,396
Number of Sequences: 5004
Number of extensions: 26408
Number of successful extensions: 80
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 110009772
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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