Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f17
         (360 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0812 + 23383704-23384143,23384902-23385247                      168   1e-42
01_06_1191 - 35297005-35297473,35297812-35298965                       28   1.9  
04_01_0618 - 8094991-8097288                                           28   2.5  
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    28   2.5  
08_01_0397 - 3509186-3510291,3510322-3512335                           27   5.9  
07_03_1564 + 27749899-27750166,27750431-27750507,27750923-277509...    26   7.7  

>12_02_0812 + 23383704-23384143,23384902-23385247
          Length = 261

 Score =  168 bits (408), Expect = 1e-42
 Identities = 75/103 (72%), Positives = 88/103 (85%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIRAQRKGAGSVF SHT  RKG  + RSLD+ ER+GY+KGVV DIIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPARFRSLDFGERNGYLKGVVTDIIHDPGRGAPLAK 60

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FR P+++K +KELF+A EG+YTGQFVYCG++ATL  GNV+P
Sbjct: 61  VTFRHPFRYKHQKELFVAAEGMYTGQFVYCGRRATLSIGNVLP 103


>01_06_1191 - 35297005-35297473,35297812-35298965
          Length = 540

 Score = 28.3 bits (60), Expect = 1.9
 Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 8/61 (13%)
 Frame = -3

Query: 331 CFLSTINKLACVEPFGSNEELLPCLELVWI---AEVYNS-----QGCTSTRVMDYILNNS 176
           C+++T++ L C+  F SN  +   L   ++   A+VY S      G  +++   Y+L N+
Sbjct: 116 CWINTVSYLLCINNFASNSRVAVSLATSYLGLSAKVYTSLAETFPGLANSKTKTYLLLNA 175

Query: 175 L 173
           +
Sbjct: 176 V 176


>04_01_0618 - 8094991-8097288
          Length = 765

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +1

Query: 241 RSIQVQDKEGALHCSRRALHRPICLLW 321
           R  Q+ D++  + C+ R   +P CLLW
Sbjct: 434 RRNQMVDQQSVIWCAARMTKKPNCLLW 460


>01_06_0823 +
           32234588-32234936,32236354-32237093,32237260-32237343,
           32237909-32239263,32240399-32240460,32240544-32241144,
           32241229-32241310,32241778-32241840
          Length = 1111

 Score = 27.9 bits (59), Expect = 2.5
 Identities = 14/33 (42%), Positives = 22/33 (66%)
 Frame = -3

Query: 301 CVEPFGSNEELLPCLELVWIAEVYNSQGCTSTR 203
           CVE    +  LLP LE V+++ + +S+GCTS +
Sbjct: 92  CVER--KDARLLPELEQVYLSLIASSRGCTSVQ 122


>08_01_0397 - 3509186-3510291,3510322-3512335
          Length = 1039

 Score = 26.6 bits (56), Expect = 5.9
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 160
           +GR  RA RKG    F+S  ++R     +++L+ +E+
Sbjct: 749 VGRTGRAGRKGFAVTFISEEEERYAPDLVKALELSEQ 785


>07_03_1564 +
           27749899-27750166,27750431-27750507,27750923-27750950,
           27751117-27751261,27751351-27751429,27751515-27751633,
           27751732-27752073,27754807-27754896,27755730-27755955,
           27756398-27756784,27757176-27757496
          Length = 693

 Score = 26.2 bits (55), Expect = 7.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 211 RCTLGCCTLPRSIQVQDKEGALHCSRRAL 297
           R  LGCC L RS ++  +E  L C +  L
Sbjct: 255 RAELGCCLLHRSGRLTIEECLLQCEQNPL 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,479,213
Number of Sequences: 37544
Number of extensions: 182777
Number of successful extensions: 393
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 554421256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)