Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f17
(360 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 182 1e-46
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 111 1e-25
SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.5
SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.6
SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09) 27 4.6
SB_15623| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.1
SB_55877| Best HMM Match : RYDR_ITPR (HMM E-Value=1.8) 26 8.0
SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17) 26 8.0
SB_57628| Best HMM Match : DUF1083 (HMM E-Value=7) 26 8.0
SB_14125| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.0
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 182 bits (442), Expect = 1e-46
Identities = 81/103 (78%), Positives = 90/103 (87%)
Frame = +2
Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
MGRVIR QRKGAGS+F SHTK RKGA LR DYAERHGYIKGVVK+IIHDPGRGAPLAV
Sbjct: 1 MGRVIRGQRKGAGSIFTSHTKHRKGAANLRVHDYAERHGYIKGVVKEIIHDPGRGAPLAV 60
Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
V FRDPY++K RKELF+A EG+YTGQF+YCGKKA L+ GN +P
Sbjct: 61 VVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCLP 103
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 111 bits (268), Expect = 1e-25
Identities = 47/61 (77%), Positives = 55/61 (90%)
Frame = +2
Query: 176 GVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVM 355
GVVK+IIHDPGRGAPLAVV FRDPY++K RKELF+A EG+YTGQF+YCGKKA L+ GN +
Sbjct: 1 GVVKEIIHDPGRGAPLAVVVFRDPYRYKLRKELFVATEGMYTGQFIYCGKKAALQIGNCL 60
Query: 356 P 358
P
Sbjct: 61 P 61
>SB_59208| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 584
Score = 27.5 bits (58), Expect = 3.5
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = -2
Query: 167 IHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHD 54
I +V + + + R++SS C KRKL R E+ + D
Sbjct: 470 IQEVVKRERKKQRNRIASSKCRKRKLEREARLENRVKD 507
>SB_59547| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1516
Score = 27.1 bits (57), Expect = 4.6
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -2
Query: 254 TCMDRGSVQQPRVHLYQGHGLY 189
T D G +Q P HLY+ HG Y
Sbjct: 515 TVTDIGDLQYPVFHLYKEHGWY 536
>SB_54257| Best HMM Match : Cache (HMM E-Value=4.4e-09)
Length = 820
Score = 27.1 bits (57), Expect = 4.6
Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 10/63 (15%)
Frame = +2
Query: 74 RKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVV----------KDIIHDPGRGAPL 223
R+ + ++ V H K G SL RHG + GVV K+++H G P
Sbjct: 407 REDSPAISVPHLIKDLGLVVTLSLAVKSRHGNVSGVVAVDAPLDTLMKEVVHFSTTGLPY 466
Query: 224 AVV 232
A+V
Sbjct: 467 AIV 469
>SB_15623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 110
Score = 26.6 bits (56), Expect = 6.1
Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 92 VFVSHTKKRKGAPKLRSLDYAERHGYI-KGVVKDIIHD 202
VFV K++KG P S+D ++ G + KG+V I D
Sbjct: 61 VFVKIMKEKKGRPSTWSVDDVKKLGSLAKGLVPSEIRD 98
>SB_55877| Best HMM Match : RYDR_ITPR (HMM E-Value=1.8)
Length = 515
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 253 LVWIAEVYNSQGCTSTRVMDYI 188
LV +AEV N+ G STR++ Y+
Sbjct: 290 LVSVAEVLNNHGSHSTRMLKYL 311
>SB_10917| Best HMM Match : SPRY (HMM E-Value=1.4e-17)
Length = 635
Score = 26.2 bits (55), Expect = 8.0
Identities = 14/49 (28%), Positives = 27/49 (55%)
Frame = +2
Query: 53 GRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIH 199
G+V+ ++G G+VF +HT + AP ++ L E+ + D++H
Sbjct: 553 GKVVYGAKRGKGAVFQTHTAEL--APSVQELAALEQQAQTSFI--DLMH 597
>SB_57628| Best HMM Match : DUF1083 (HMM E-Value=7)
Length = 365
Score = 26.2 bits (55), Expect = 8.0
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -2
Query: 170 CIHDVQRNLKSEV*ERLSSSSCEKRKLNRHPYAEHVLHD 54
C+HD++ K + SCEK K+NR+ + V H+
Sbjct: 105 CVHDIKLAKKKDA----VLVSCEKHKINRNKDIKGVQHN 139
>SB_14125| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 89
Score = 26.2 bits (55), Expect = 8.0
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 253 LVWIAEVYNSQGCTSTRVMDYI 188
LV +AEV N+ G STR++ Y+
Sbjct: 5 LVSVAEVLNNHGSHSTRMLKYL 26
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,952,376
Number of Sequences: 59808
Number of extensions: 211283
Number of successful extensions: 483
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 572951758
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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