BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f17 (360 letters) Database: human 237,096 sequences; 76,859,062 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8 prot... 177 1e-44 CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein. 177 1e-44 BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8 pr... 177 1e-44 BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8 pr... 177 1e-44 BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8 pr... 177 1e-44 BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8 pr... 177 1e-44 BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8 pr... 177 1e-44 AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8 pr... 177 1e-44 AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8 pr... 169 3e-42 BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein. 101 5e-22 BC071733-1|AAH71733.1| 457|Homo sapiens retinoic acid receptor,... 28 7.6 AF283809-1|AAF87249.1| 54|Homo sapiens retinoic acid receptor ... 28 7.6 >Z28407-1|CAA82248.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 177 bits (430), Expect = 1e-44 Identities = 80/103 (77%), Positives = 90/103 (87%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L GNV+P Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 103 >CR457046-1|CAG33327.1| 257|Homo sapiens RPL8 protein. Length = 257 Score = 177 bits (430), Expect = 1e-44 Identities = 80/103 (77%), Positives = 90/103 (87%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L GNV+P Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 103 >BT007379-1|AAP36043.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 177 bits (430), Expect = 1e-44 Identities = 80/103 (77%), Positives = 90/103 (87%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L GNV+P Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLP 103 >BC093064-1|AAH93064.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 177 bits (430), Expect = 1e-44 Identities = 80/103 (77%), Positives = 90/103 (87%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L GNV+P Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 103 >BC013104-1|AAH13104.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 177 bits (430), Expect = 1e-44 Identities = 80/103 (77%), Positives = 90/103 (87%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L GNV+P Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLP 103 >BC012197-1|AAH12197.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 177 bits (430), Expect = 1e-44 Identities = 80/103 (77%), Positives = 90/103 (87%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L GNV+P Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLP 103 >BC000077-1|AAH00077.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 177 bits (430), Expect = 1e-44 Identities = 80/103 (77%), Positives = 90/103 (87%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L GNV+P Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 103 >AB061821-1|BAB79459.1| 257|Homo sapiens ribosomal protein L8 protein. Length = 257 Score = 177 bits (430), Expect = 1e-44 Identities = 80/103 (77%), Positives = 90/103 (87%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA Sbjct: 1 MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L GNV+P Sbjct: 61 VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 103 >AB007168-1|BAA25829.1| 130|Homo sapiens ribosomal protein L8 protein. Length = 130 Score = 169 bits (410), Expect = 3e-42 Identities = 76/99 (76%), Positives = 86/99 (86%) Frame = +2 Query: 62 IRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 241 IR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FR Sbjct: 1 IRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFR 60 Query: 242 DPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 DPY+FK R ELFIA EG++TGQFVYCGKKA L GNV+P Sbjct: 61 DPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 99 >BC000047-1|AAH00047.2| 211|Homo sapiens RPL8 protein protein. Length = 211 Score = 101 bits (243), Expect = 5e-22 Identities = 45/57 (78%), Positives = 49/57 (85%) Frame = +2 Query: 188 DIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 DIIHDPGRGAPLA V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L GNV+P Sbjct: 1 DIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 57 >BC071733-1|AAH71733.1| 457|Homo sapiens retinoic acid receptor, alpha protein. Length = 457 Score = 28.3 bits (60), Expect = 7.6 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = -1 Query: 285 GAMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 172 G + FLV++ Y +R C KG P PG + L TPL Sbjct: 9 GPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48 >AF283809-1|AAF87249.1| 54|Homo sapiens retinoic acid receptor alpha 2 isoform protein. Length = 54 Score = 28.3 bits (60), Expect = 7.6 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%) Frame = -1 Query: 285 GAMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 172 G + FLV++ Y +R C KG P PG + L TPL Sbjct: 9 GPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48 Database: human Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 76,859,062 Number of sequences in database: 237,096 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 51,146,327 Number of Sequences: 237096 Number of extensions: 1051674 Number of successful extensions: 1914 Number of sequences better than 10.0: 12 Number of HSP's better than 10.0 without gapping: 1806 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1914 length of database: 76,859,062 effective HSP length: 81 effective length of database: 57,654,286 effective search space used: 2190862868 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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