Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f17
         (360 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z28407-1|CAA82248.1|  257|Homo sapiens ribosomal protein L8 prot...   177   1e-44
CR457046-1|CAG33327.1|  257|Homo sapiens RPL8 protein.                177   1e-44
BT007379-1|AAP36043.1|  257|Homo sapiens ribosomal protein L8 pr...   177   1e-44
BC093064-1|AAH93064.1|  257|Homo sapiens ribosomal protein L8 pr...   177   1e-44
BC013104-1|AAH13104.1|  257|Homo sapiens ribosomal protein L8 pr...   177   1e-44
BC012197-1|AAH12197.1|  257|Homo sapiens ribosomal protein L8 pr...   177   1e-44
BC000077-1|AAH00077.1|  257|Homo sapiens ribosomal protein L8 pr...   177   1e-44
AB061821-1|BAB79459.1|  257|Homo sapiens ribosomal protein L8 pr...   177   1e-44
AB007168-1|BAA25829.1|  130|Homo sapiens ribosomal protein L8 pr...   169   3e-42
BC000047-1|AAH00047.2|  211|Homo sapiens RPL8 protein protein.        101   5e-22
BC071733-1|AAH71733.1|  457|Homo sapiens retinoic acid receptor,...    28   7.6  
AF283809-1|AAF87249.1|   54|Homo sapiens retinoic acid receptor ...    28   7.6  

>Z28407-1|CAA82248.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  177 bits (430), Expect = 1e-44
 Identities = 80/103 (77%), Positives = 90/103 (87%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+P
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 103


>CR457046-1|CAG33327.1|  257|Homo sapiens RPL8 protein.
          Length = 257

 Score =  177 bits (430), Expect = 1e-44
 Identities = 80/103 (77%), Positives = 90/103 (87%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+P
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 103


>BT007379-1|AAP36043.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  177 bits (430), Expect = 1e-44
 Identities = 80/103 (77%), Positives = 90/103 (87%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+P
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLP 103


>BC093064-1|AAH93064.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  177 bits (430), Expect = 1e-44
 Identities = 80/103 (77%), Positives = 90/103 (87%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+P
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 103


>BC013104-1|AAH13104.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  177 bits (430), Expect = 1e-44
 Identities = 80/103 (77%), Positives = 90/103 (87%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+P
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLP 103


>BC012197-1|AAH12197.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  177 bits (430), Expect = 1e-44
 Identities = 80/103 (77%), Positives = 90/103 (87%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+P
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNVGNVLP 103


>BC000077-1|AAH00077.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  177 bits (430), Expect = 1e-44
 Identities = 80/103 (77%), Positives = 90/103 (87%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+P
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 103


>AB061821-1|BAB79459.1|  257|Homo sapiens ribosomal protein L8
           protein.
          Length = 257

 Score =  177 bits (430), Expect = 1e-44
 Identities = 80/103 (77%), Positives = 90/103 (87%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA 
Sbjct: 1   MGRVIRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAK 60

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+P
Sbjct: 61  VVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 103


>AB007168-1|BAA25829.1|  130|Homo sapiens ribosomal protein L8
           protein.
          Length = 130

 Score =  169 bits (410), Expect = 3e-42
 Identities = 76/99 (76%), Positives = 86/99 (86%)
 Frame = +2

Query: 62  IRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFR 241
           IR QRKGAGSVF +H K RKGA +LR++D+AERHGYIKG+VKDIIHDPGRGAPLA V FR
Sbjct: 1   IRGQRKGAGSVFRAHVKHRKGAARLRAVDFAERHGYIKGIVKDIIHDPGRGAPLAKVVFR 60

Query: 242 DPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           DPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+P
Sbjct: 61  DPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 99


>BC000047-1|AAH00047.2|  211|Homo sapiens RPL8 protein protein.
          Length = 211

 Score =  101 bits (243), Expect = 5e-22
 Identities = 45/57 (78%), Positives = 49/57 (85%)
 Frame = +2

Query: 188 DIIHDPGRGAPLAVVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           DIIHDPGRGAPLA V FRDPY+FK R ELFIA EG++TGQFVYCGKKA L  GNV+P
Sbjct: 1   DIIHDPGRGAPLAKVVFRDPYRFKKRTELFIAAEGIHTGQFVYCGKKAQLNIGNVLP 57


>BC071733-1|AAH71733.1|  457|Homo sapiens retinoic acid receptor,
           alpha protein.
          Length = 457

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 285 GAMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 172
           G   + FLV++ Y  +R C    KG P PG +   L TPL
Sbjct: 9   GPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48


>AF283809-1|AAF87249.1|   54|Homo sapiens retinoic acid receptor
           alpha 2 isoform protein.
          Length = 54

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -1

Query: 285 GAMKSSFLVLNLYG-SRKCTTA-KGAPLPGSWIISLTTPL 172
           G   + FLV++ Y  +R C    KG P PG +   L TPL
Sbjct: 9   GPTPNPFLVVDFYNQNRACLLPEKGLPAPGPYSTPLRTPL 48


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 51,146,327
Number of Sequences: 237096
Number of extensions: 1051674
Number of successful extensions: 1914
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1914
length of database: 76,859,062
effective HSP length: 81
effective length of database: 57,654,286
effective search space used: 2190862868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)