Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f17
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical pr...   166   5e-42
Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical pr...    29   1.3  
Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical p...    28   1.7  
Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical pr...    28   1.7  
Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical p...    28   2.3  
Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AL117207-13|CAB60393.2|  327|Caenorhabditis elegans Hypothetical...    26   9.1  

>Z81453-1|CAB03792.1|  260|Caenorhabditis elegans Hypothetical
           protein B0250.1 protein.
          Length = 260

 Score =  166 bits (403), Expect = 5e-42
 Identities = 72/103 (69%), Positives = 86/103 (83%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGR IR QRKGAG +F SH K RKGA KLR LDYAERHGYIKG+VKDIIHDPGRGAPLA+
Sbjct: 1   MGRRIRIQRKGAGGIFKSHNKHRKGASKLRPLDYAERHGYIKGLVKDIIHDPGRGAPLAI 60

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           + FRDPYK+KT K   +A EG++TGQF++CG KA ++ GN++P
Sbjct: 61  IAFRDPYKYKTVKTTVVAAEGMHTGQFIHCGAKAQIQIGNIVP 103


>Z81555-7|CAB04518.1|  561|Caenorhabditis elegans Hypothetical
           protein F58E10.3a protein.
          Length = 561

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAER 160
           +GR  R+ +KG    F +HT   K    L+ LD A++
Sbjct: 464 IGRTGRSDKKGTAYTFFTHTNASKAKDLLKVLDEAKQ 500


>Z81589-11|CAI58924.1|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 161 HGYIKGVVKDIIHDPGRGAPLAVVHFR 241
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z81555-8|CAB04512.2|  330|Caenorhabditis elegans Hypothetical
           protein F58E10.6 protein.
          Length = 330

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +2

Query: 161 HGYIKGVVKDIIHDPGRGAPLAVVHFR 241
           HG +  +V  I+H P R + LA +HF+
Sbjct: 285 HGVLSTIVMLIVHTPHRKSILATLHFK 311


>Z99281-24|CAE18027.1|  155|Caenorhabditis elegans Hypothetical
           protein Y57G11C.44 protein.
          Length = 155

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 12/42 (28%), Positives = 24/42 (57%)
 Frame = +2

Query: 98  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPL 223
           +S  ++RK +     LD+++  G  K ++KDI +D  +  P+
Sbjct: 1   MSEVRQRKSSIIDSDLDFSDSDGEFKEIIKDIENDQWKDKPV 42


>Z83238-4|CAB05795.1|  341|Caenorhabditis elegans Hypothetical
           protein T08G3.5 protein.
          Length = 341

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +2

Query: 161 HGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFI 280
           HG    +V  ++H P R A L ++  +   K  T  ++F+
Sbjct: 285 HGLFSTIVMLVVHKPYRQATLQILKIKRIEKIGTANKVFL 324


>AL117207-13|CAB60393.2|  327|Caenorhabditis elegans Hypothetical
           protein Y60A3A.4 protein.
          Length = 327

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 161 HGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKT 262
           HG    +V  I+H P R A  +++H +     KT
Sbjct: 280 HGVCTTLVMIIVHKPYRQATFSILHLKSVRPLKT 313


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,966,483
Number of Sequences: 27780
Number of extensions: 157659
Number of successful extensions: 354
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 348
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)