Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f17
         (360 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso...   169   5e-43
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)             169   5e-43
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso...   158   9e-40
At3g46810.1 68416.m05081 DC1 domain-containing protein contains ...    29   0.93 
At1g44130.1 68414.m05097 nucellin protein, putative similar to n...    27   2.8  
At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa...    27   3.8  
At2g42730.1 68415.m05292 F-box family protein contains F-box dom...    27   3.8  
At2g34830.1 68415.m04276 WRKY family transcription factor              27   5.0  
At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co...    26   6.6  
At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR ...    26   6.6  
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c...    26   6.6  
At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ...    26   6.6  
At5g56370.2 68418.m07037 F-box family protein contains F-box dom...    26   8.7  
At5g56370.1 68418.m07036 F-box family protein contains F-box dom...    26   8.7  
At3g21900.1 68416.m02761 receptor-like protein kinase-related co...    26   8.7  

>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
           protein L8, cytosolic, tomato, PIR1:R5TOL8
          Length = 258

 Score =  169 bits (411), Expect = 5e-43
 Identities = 77/103 (74%), Positives = 88/103 (85%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FR P++FK +KELF+A EG+YTGQF+YCGKKATL  GNV+P
Sbjct: 61  VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLP 103


>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 
          Length = 258

 Score =  169 bits (411), Expect = 5e-43
 Identities = 77/103 (74%), Positives = 88/103 (85%)
 Frame = +2

Query: 50  MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229
           MGRVIRAQRKGAGSVF SHT  RKG  K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA 
Sbjct: 1   MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60

Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
           V FR P++FK +KELF+A EG+YTGQF+YCGKKATL  GNV+P
Sbjct: 61  VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLP 103


>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
           protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
          Length = 260

 Score =  158 bits (384), Expect = 9e-40
 Identities = 73/104 (70%), Positives = 86/104 (82%), Gaps = 1/104 (0%)
 Frame = +2

Query: 50  MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 226
           MGRVIRAQRKGA GSVF SHT  RKG  K RSLDY ER+GY+KG+V +IIHDPGRGAPLA
Sbjct: 1   MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60

Query: 227 VVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358
            V FR P+++  +KELF+A EG+YTGQ++YCGKKA L  GNV+P
Sbjct: 61  RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLP 104


>At3g46810.1 68416.m05081 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 686

 Score = 29.1 bits (62), Expect = 0.93
 Identities = 15/46 (32%), Positives = 24/46 (52%)
 Frame = -3

Query: 352 HISXFKSCFLSTINKLACVEPFGSNEELLPCLELVWIAEVYNSQGC 215
           H+   KS  LS   +L+ +E +  +E  L   +  W+AE  N +GC
Sbjct: 99  HLVCAKSPPLSLQPQLSSIENYKVHEHPLKPFKTAWLAETGNCKGC 144


>At1g44130.1 68414.m05097 nucellin protein, putative similar to
           nucellin GI:2290202 from [Hordeum vulgare]
          Length = 405

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%)
 Frame = +1

Query: 205 W*RCTLGC--CTLPRSIQVQDKEGALHCSR---RALHRP 306
           W +C   C  CTLP ++Q + K   + CS     ALH P
Sbjct: 74  WVQCDAPCSGCTLPPNLQYKPKGNIIPCSNPICTALHWP 112


>At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 666

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = +3

Query: 210 EVHPWLLYTSAIHTSSRQGRSSSLLPKG 293
           EV PW L+ S    S+  G S  LLP G
Sbjct: 439 EVAPWSLFPSIESESATHGASLPLLPTG 466


>At2g42730.1 68415.m05292 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 737

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 14/26 (53%), Positives = 15/26 (57%)
 Frame = -3

Query: 274 ELLPCLELVWIAEVYNSQGCTSTRVM 197
           E LPCLELV I  V NS    +T  M
Sbjct: 408 EKLPCLELVKICVVNNSNNLQTTMEM 433


>At2g34830.1 68415.m04276 WRKY family transcription factor
          Length = 427

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
 Frame = +3

Query: 216 HPWLLYTSAIHTSSRQGRSSSLLP--KGSTQA 305
           HPW    +A+  S+R   SSSL P  K ST A
Sbjct: 272 HPWPTQRNALAGSTRSSSSSSLNPSSKSSTAA 303


>At5g42400.1 68418.m05162 SET domain-containing protein (TXR7)
            contains Pfam profile PF00856: SET domain
          Length = 1423

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 110  KKRKGAPKL-RSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIA 283
            K +KG  KL R      +H   +  +KD+  D GR  P+A+          ++K+LF++
Sbjct: 1122 KLQKGPNKLIRRRKPLAKHTTERSPIKDLSVDDGRPKPIALKPLEKLSSKPSKKKLFLS 1180


>At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 901

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +2

Query: 221 LAVVHFRDPYKFKTRK-ELFIAPEGLYTG 304
           L + HF + YK KTR    + A EG+Y G
Sbjct: 422 LYLAHFPEDYKIKTRTLYSYWAAEGIYDG 450


>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 839

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%)
 Frame = +2

Query: 98  VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIH-DPGRGAPLAV 229
           VS+++ R+G P +RS   + RH  ++G   D ++ +  RGA + +
Sbjct: 359 VSNSRARRGFPTVRSGSSSPRHWGMRGWFHDGVNWEEPRGAEIVL 403


>At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to
           ribosomal protein L2 [Gossypium arboreum] GI:17933133;
           contains Pfam profile PF00181: Ribosomal Proteins L2,
           RNA binding domain
          Length = 307

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
 Frame = +2

Query: 68  AQRKGAGSVFVSHTKKRKGAPK--LRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHF 238
           A R  +G + V H   R G  K  LR +D  +R     G+V+ I +DP R + +A V +
Sbjct: 20  AGRNSSGRITVFH---RGGGSKRLLRRIDL-KRSTSSMGIVESIEYDPNRSSQIAPVRW 74


>At5g56370.2 68418.m07037 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 421

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 119 KGAPKLRSLDYAERHGY 169
           K +PKLRSL   E HGY
Sbjct: 305 KHSPKLRSLKLNETHGY 321


>At5g56370.1 68418.m07036 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 421

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +2

Query: 119 KGAPKLRSLDYAERHGY 169
           K +PKLRSL   E HGY
Sbjct: 305 KHSPKLRSLKLNETHGY 321


>At3g21900.1 68416.m02761 receptor-like protein kinase-related
           contains Pfam profile: PF01657 Domain of unknown
           function that is usually associated with protein kinase
           domain Pfam:PF00069
          Length = 250

 Score = 25.8 bits (54), Expect = 8.7
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 273 SSFLVLNLYGSRKCTTAKGAPLPGSW 196
           SS  + N Y + KC   +G   PGSW
Sbjct: 29  SSLNMTNAYLNHKCLANQGKYKPGSW 54


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,576,753
Number of Sequences: 28952
Number of extensions: 142619
Number of successful extensions: 348
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 343
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 12,070,560
effective HSP length: 72
effective length of database: 9,986,016
effective search space used: 469342752
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)