BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f17 (360 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 169 5e-43 At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 169 5e-43 At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 158 9e-40 At3g46810.1 68416.m05081 DC1 domain-containing protein contains ... 29 0.93 At1g44130.1 68414.m05097 nucellin protein, putative similar to n... 27 2.8 At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) fa... 27 3.8 At2g42730.1 68415.m05292 F-box family protein contains F-box dom... 27 3.8 At2g34830.1 68415.m04276 WRKY family transcription factor 27 5.0 At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) co... 26 6.6 At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR ... 26 6.6 At4g00060.1 68417.m00006 nucleotidyltransferase family protein c... 26 6.6 At2g07715.1 68415.m00965 ribosomal protein L2, putative similar ... 26 6.6 At5g56370.2 68418.m07037 F-box family protein contains F-box dom... 26 8.7 At5g56370.1 68418.m07036 F-box family protein contains F-box dom... 26 8.7 At3g21900.1 68416.m02761 receptor-like protein kinase-related co... 26 8.7 >At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal protein L8, cytosolic, tomato, PIR1:R5TOL8 Length = 258 Score = 169 bits (411), Expect = 5e-43 Identities = 77/103 (74%), Positives = 88/103 (85%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FR P++FK +KELF+A EG+YTGQF+YCGKKATL GNV+P Sbjct: 61 VAFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLP 103 >At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) Length = 258 Score = 169 bits (411), Expect = 5e-43 Identities = 77/103 (74%), Positives = 88/103 (85%) Frame = +2 Query: 50 MGRVIRAQRKGAGSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLAV 229 MGRVIRAQRKGAGSVF SHT RKG K RSLD+ ER+GY+KGVV +IIHDPGRGAPLA Sbjct: 1 MGRVIRAQRKGAGSVFKSHTHHRKGPAKFRSLDFGERNGYLKGVVTEIIHDPGRGAPLAR 60 Query: 230 VHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FR P++FK +KELF+A EG+YTGQF+YCGKKATL GNV+P Sbjct: 61 VTFRHPFRFKKQKELFVAAEGMYTGQFLYCGKKATLVVGNVLP 103 >At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582 Length = 260 Score = 158 bits (384), Expect = 9e-40 Identities = 73/104 (70%), Positives = 86/104 (82%), Gaps = 1/104 (0%) Frame = +2 Query: 50 MGRVIRAQRKGA-GSVFVSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIHDPGRGAPLA 226 MGRVIRAQRKGA GSVF SHT RKG K RSLDY ER+GY+KG+V +IIHDPGRGAPLA Sbjct: 1 MGRVIRAQRKGAAGSVFKSHTHHRKGPAKFRSLDYGERNGYLKGLVTEIIHDPGRGAPLA 60 Query: 227 VVHFRDPYKFKTRKELFIAPEGLYTGQFVYCGKKATLEXGNVMP 358 V FR P+++ +KELF+A EG+YTGQ++YCGKKA L GNV+P Sbjct: 61 RVAFRHPFRYMKQKELFVAAEGMYTGQYLYCGKKANLMVGNVLP 104 >At3g46810.1 68416.m05081 DC1 domain-containing protein contains Pfam profile PF03107: DC1 domain Length = 686 Score = 29.1 bits (62), Expect = 0.93 Identities = 15/46 (32%), Positives = 24/46 (52%) Frame = -3 Query: 352 HISXFKSCFLSTINKLACVEPFGSNEELLPCLELVWIAEVYNSQGC 215 H+ KS LS +L+ +E + +E L + W+AE N +GC Sbjct: 99 HLVCAKSPPLSLQPQLSSIENYKVHEHPLKPFKTAWLAETGNCKGC 144 >At1g44130.1 68414.m05097 nucellin protein, putative similar to nucellin GI:2290202 from [Hordeum vulgare] Length = 405 Score = 27.5 bits (58), Expect = 2.8 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 5/39 (12%) Frame = +1 Query: 205 W*RCTLGC--CTLPRSIQVQDKEGALHCSR---RALHRP 306 W +C C CTLP ++Q + K + CS ALH P Sbjct: 74 WVQCDAPCSGCTLPPNLQYKPKGNIIPCSNPICTALHWP 112 >At4g34040.1 68417.m04830 zinc finger (C3HC4-type RING finger) family protein similar to Pfam domain, PF00097: Zinc finger, C3HC4 type (RING finger) Length = 666 Score = 27.1 bits (57), Expect = 3.8 Identities = 13/28 (46%), Positives = 15/28 (53%) Frame = +3 Query: 210 EVHPWLLYTSAIHTSSRQGRSSSLLPKG 293 EV PW L+ S S+ G S LLP G Sbjct: 439 EVAPWSLFPSIESESATHGASLPLLPTG 466 >At2g42730.1 68415.m05292 F-box family protein contains F-box domain Pfam:PF00646 Length = 737 Score = 27.1 bits (57), Expect = 3.8 Identities = 14/26 (53%), Positives = 15/26 (57%) Frame = -3 Query: 274 ELLPCLELVWIAEVYNSQGCTSTRVM 197 E LPCLELV I V NS +T M Sbjct: 408 EKLPCLELVKICVVNNSNNLQTTMEM 433 >At2g34830.1 68415.m04276 WRKY family transcription factor Length = 427 Score = 26.6 bits (56), Expect = 5.0 Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%) Frame = +3 Query: 216 HPWLLYTSAIHTSSRQGRSSSLLP--KGSTQA 305 HPW +A+ S+R SSSL P K ST A Sbjct: 272 HPWPTQRNALAGSTRSSSSSSLNPSSKSSTAA 303 >At5g42400.1 68418.m05162 SET domain-containing protein (TXR7) contains Pfam profile PF00856: SET domain Length = 1423 Score = 26.2 bits (55), Expect = 6.6 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%) Frame = +2 Query: 110 KKRKGAPKL-RSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHFRDPYKFKTRKELFIA 283 K +KG KL R +H + +KD+ D GR P+A+ ++K+LF++ Sbjct: 1122 KLQKGPNKLIRRRKPLAKHTTERSPIKDLSVDDGRPKPIALKPLEKLSSKPSKKKLFLS 1180 >At5g35450.1 68418.m04215 disease resistance protein (CC-NBS-LRR class), putative domain signature CC-NBS-LRR exists, suggestive of a disease resistance protein. Length = 901 Score = 26.2 bits (55), Expect = 6.6 Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 1/29 (3%) Frame = +2 Query: 221 LAVVHFRDPYKFKTRK-ELFIAPEGLYTG 304 L + HF + YK KTR + A EG+Y G Sbjct: 422 LYLAHFPEDYKIKTRTLYSYWAAEGIYDG 450 >At4g00060.1 68417.m00006 nucleotidyltransferase family protein contains Pfam profile: PF01909 nucleotidyltransferase domain Length = 839 Score = 26.2 bits (55), Expect = 6.6 Identities = 14/45 (31%), Positives = 27/45 (60%), Gaps = 1/45 (2%) Frame = +2 Query: 98 VSHTKKRKGAPKLRSLDYAERHGYIKGVVKDIIH-DPGRGAPLAV 229 VS+++ R+G P +RS + RH ++G D ++ + RGA + + Sbjct: 359 VSNSRARRGFPTVRSGSSSPRHWGMRGWFHDGVNWEEPRGAEIVL 403 >At2g07715.1 68415.m00965 ribosomal protein L2, putative similar to ribosomal protein L2 [Gossypium arboreum] GI:17933133; contains Pfam profile PF00181: Ribosomal Proteins L2, RNA binding domain Length = 307 Score = 26.2 bits (55), Expect = 6.6 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 2/59 (3%) Frame = +2 Query: 68 AQRKGAGSVFVSHTKKRKGAPK--LRSLDYAERHGYIKGVVKDIIHDPGRGAPLAVVHF 238 A R +G + V H R G K LR +D +R G+V+ I +DP R + +A V + Sbjct: 20 AGRNSSGRITVFH---RGGGSKRLLRRIDL-KRSTSSMGIVESIEYDPNRSSQIAPVRW 74 >At5g56370.2 68418.m07037 F-box family protein contains F-box domain Pfam:PF00646 Length = 421 Score = 25.8 bits (54), Expect = 8.7 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = +2 Query: 119 KGAPKLRSLDYAERHGY 169 K +PKLRSL E HGY Sbjct: 305 KHSPKLRSLKLNETHGY 321 >At5g56370.1 68418.m07036 F-box family protein contains F-box domain Pfam:PF00646 Length = 421 Score = 25.8 bits (54), Expect = 8.7 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = +2 Query: 119 KGAPKLRSLDYAERHGY 169 K +PKLRSL E HGY Sbjct: 305 KHSPKLRSLKLNETHGY 321 >At3g21900.1 68416.m02761 receptor-like protein kinase-related contains Pfam profile: PF01657 Domain of unknown function that is usually associated with protein kinase domain Pfam:PF00069 Length = 250 Score = 25.8 bits (54), Expect = 8.7 Identities = 11/26 (42%), Positives = 14/26 (53%) Frame = -1 Query: 273 SSFLVLNLYGSRKCTTAKGAPLPGSW 196 SS + N Y + KC +G PGSW Sbjct: 29 SSLNMTNAYLNHKCLANQGKYKPGSW 54 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 7,576,753 Number of Sequences: 28952 Number of extensions: 142619 Number of successful extensions: 348 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 343 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 347 length of database: 12,070,560 effective HSP length: 72 effective length of database: 9,986,016 effective search space used: 469342752 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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