BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f16 (552 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.085 SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 27 2.4 SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 7.4 SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.4 SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 25 7.4 SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 7.4 SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 9.8 SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 25 9.8 SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 9.8 >SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 800 Score = 31.5 bits (68), Expect = 0.085 Identities = 17/56 (30%), Positives = 20/56 (35%) Frame = +2 Query: 116 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283 PP G T P T + PP ST S G P + TS T+ P Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPP 347 Score = 31.5 bits (68), Expect = 0.085 Identities = 17/56 (30%), Positives = 20/56 (35%) Frame = +2 Query: 116 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283 PP G T P T + PP ST S G P + TS T+ P Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPP 401 >SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosaccharomyces pombe|chr 1|||Manual Length = 741 Score = 26.6 bits (56), Expect = 2.4 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%) Frame = +2 Query: 188 PPSATSTFSHGQGDEPKATNGTSVA-TNGQST 280 PP++TS S+G G P+ G+S NG T Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQT 451 >SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pombe|chr 1|||Manual Length = 561 Score = 25.0 bits (52), Expect = 7.4 Identities = 15/62 (24%), Positives = 29/62 (46%) Frame = +2 Query: 92 RLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNG 271 R VL P HT+ + PE R G + P S++ + + P + + ++ + NG Sbjct: 448 RGGKNVLSPEAKEHTHK-NISPESSRFGTPSDPNSSSQSLGNEVLSRPNSNSNSAESRNG 506 Query: 272 QS 277 ++ Sbjct: 507 ET 508 >SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 615 Score = 25.0 bits (52), Expect = 7.4 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%) Frame = +3 Query: 111 SAPPVVATLTSSIPNRSHRGPGAVPFHQ-AQRALSATDK 224 + P +A TS+IPN GP P Q AQ A ++ K Sbjct: 16 AVPKSLAGSTSNIPNELFVGPDGRPLSQNAQGASKSSSK 54 >SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr 1|||Manual Length = 598 Score = 25.0 bits (52), Expect = 7.4 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 8/78 (10%) Frame = +2 Query: 68 NVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST--------FSHGQ 223 N N G S+ P T +P T A P S+TST FS G+ Sbjct: 147 NNSFNFGKPASTTNTTTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGK 206 Query: 224 GDEPKATNGTSVATNGQS 277 +TN S +T S Sbjct: 207 PASLGSTNNASTSTTANS 224 >SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1|||Manual Length = 574 Score = 25.0 bits (52), Expect = 7.4 Identities = 16/56 (28%), Positives = 25/56 (44%) Frame = +2 Query: 116 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283 PP +N S P PP+ GR A PP + + G +P + + +N + P Sbjct: 339 PPPPPRSNAAGSIPLPPQ-GRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPAPP 392 >SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 507 Score = 24.6 bits (51), Expect = 9.8 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = -3 Query: 196 AWWNGTAPGPRWLRFGIEDVSVATTGGAE 110 A W+ A PR L++G D S TTG E Sbjct: 384 AIWSLNAQIPRTLQYGNADCSCWTTGCGE 412 >SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces pombe|chr 2|||Manual Length = 516 Score = 24.6 bits (51), Expect = 9.8 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = +1 Query: 232 AESDQRHFSSDQRSVHS 282 AES+ H SS Q+S HS Sbjct: 227 AESNNEHLSSSQKSKHS 243 >SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual Length = 534 Score = 24.6 bits (51), Expect = 9.8 Identities = 9/17 (52%), Positives = 11/17 (64%) Frame = -1 Query: 456 CGSVYHKPEENPPGGTL 406 CGS YH + NPP T+ Sbjct: 53 CGSGYHGMQLNPPSKTI 69 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,915,596 Number of Sequences: 5004 Number of extensions: 32131 Number of successful extensions: 98 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 93 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 98 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 229961028 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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