Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f16
(552 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.085
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 27 2.4
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom... 25 7.4
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 7.4
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 25 7.4
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 25 7.4
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 9.8
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po... 25 9.8
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn... 25 9.8
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 31.5 bits (68), Expect = 0.085
Identities = 17/56 (30%), Positives = 20/56 (35%)
Frame = +2
Query: 116 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283
PP G T P T + PP ST S G P + TS T+ P
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPP 347
Score = 31.5 bits (68), Expect = 0.085
Identities = 17/56 (30%), Positives = 20/56 (35%)
Frame = +2
Query: 116 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283
PP G T P T + PP ST S G P + TS T+ P
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPP 401
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 2.4
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +2
Query: 188 PPSATSTFSHGQGDEPKATNGTSVA-TNGQST 280
PP++TS S+G G P+ G+S NG T
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQT 451
>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/62 (24%), Positives = 29/62 (46%)
Frame = +2
Query: 92 RLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNG 271
R VL P HT+ + PE R G + P S++ + + P + + ++ + NG
Sbjct: 448 RGGKNVLSPEAKEHTHK-NISPESSRFGTPSDPNSSSQSLGNEVLSRPNSNSNSAESRNG 506
Query: 272 QS 277
++
Sbjct: 507 ET 508
>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 615
Score = 25.0 bits (52), Expect = 7.4
Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Frame = +3
Query: 111 SAPPVVATLTSSIPNRSHRGPGAVPFHQ-AQRALSATDK 224
+ P +A TS+IPN GP P Q AQ A ++ K
Sbjct: 16 AVPKSLAGSTSNIPNELFVGPDGRPLSQNAQGASKSSSK 54
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 7.4
Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
Frame = +2
Query: 68 NVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST--------FSHGQ 223
N N G S+ P T +P T A P S+TST FS G+
Sbjct: 147 NNSFNFGKPASTTNTTTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGK 206
Query: 224 GDEPKATNGTSVATNGQS 277
+TN S +T S
Sbjct: 207 PASLGSTNNASTSTTANS 224
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.0 bits (52), Expect = 7.4
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +2
Query: 116 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283
PP +N S P PP+ GR A PP + + G +P + + +N + P
Sbjct: 339 PPPPPRSNAAGSIPLPPQ-GRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPAPP 392
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 24.6 bits (51), Expect = 9.8
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -3
Query: 196 AWWNGTAPGPRWLRFGIEDVSVATTGGAE 110
A W+ A PR L++G D S TTG E
Sbjct: 384 AIWSLNAQIPRTLQYGNADCSCWTTGCGE 412
>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 24.6 bits (51), Expect = 9.8
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +1
Query: 232 AESDQRHFSSDQRSVHS 282
AES+ H SS Q+S HS
Sbjct: 227 AESNNEHLSSSQKSKHS 243
>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 534
Score = 24.6 bits (51), Expect = 9.8
Identities = 9/17 (52%), Positives = 11/17 (64%)
Frame = -1
Query: 456 CGSVYHKPEENPPGGTL 406
CGS YH + NPP T+
Sbjct: 53 CGSGYHGMQLNPPSKTI 69
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,596
Number of Sequences: 5004
Number of extensions: 32131
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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