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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f16
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    31   0.085
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac...    27   2.4  
SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces pom...    25   7.4  
SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   7.4  
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c...    25   7.4  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.4  
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po...    25   9.8  
SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces po...    25   9.8  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   9.8  

>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 31.5 bits (68), Expect = 0.085
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +2

Query: 116 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 292 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSCTTSTSIPP 347



 Score = 31.5 bits (68), Expect = 0.085
 Identities = 17/56 (30%), Positives = 20/56 (35%)
 Frame = +2

Query: 116 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283
           PP G  T        P  T   + PP   ST S G    P  +  TS  T+    P
Sbjct: 346 PPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPP 401


>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
           Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +2

Query: 188 PPSATSTFSHGQGDEPKATNGTSVA-TNGQST 280
           PP++TS  S+G G  P+   G+S    NG  T
Sbjct: 420 PPTSTSVSSYGLGKTPQPAYGSSSPYVNGHQT 451


>SPAC24B11.07c |||ketopantoate reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 561

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/62 (24%), Positives = 29/62 (46%)
 Frame = +2

Query: 92  RLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNG 271
           R    VL P    HT+  +  PE  R G  + P S++ +  +     P + + ++ + NG
Sbjct: 448 RGGKNVLSPEAKEHTHK-NISPESSRFGTPSDPNSSSQSLGNEVLSRPNSNSNSAESRNG 506

Query: 272 QS 277
           ++
Sbjct: 507 ET 508


>SPBC18E5.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 615

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 111 SAPPVVATLTSSIPNRSHRGPGAVPFHQ-AQRALSATDK 224
           + P  +A  TS+IPN    GP   P  Q AQ A  ++ K
Sbjct: 16  AVPKSLAGSTSNIPNELFVGPDGRPLSQNAQGASKSSSK 54


>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 598

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 22/78 (28%), Positives = 28/78 (35%), Gaps = 8/78 (10%)
 Frame = +2

Query: 68  NVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATST--------FSHGQ 223
           N   N G   S+     P    T     +P    T   A P S+TST        FS G+
Sbjct: 147 NNSFNFGKPASTTNTTTPAAASTGSLFGKPAATGTTSNAPPASSTSTTPATGSGGFSFGK 206

Query: 224 GDEPKATNGTSVATNGQS 277
                +TN  S +T   S
Sbjct: 207 PASLGSTNNASTSTTANS 224


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +2

Query: 116 PPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283
           PP    +N   S P PP+ GR A PP    + +   G +P   + +   +N  + P
Sbjct: 339 PPPPPRSNAAGSIPLPPQ-GRSAPPPPPPRS-APSTGRQPPPLSSSRAVSNPPAPP 392


>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 507

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 196 AWWNGTAPGPRWLRFGIEDVSVATTGGAE 110
           A W+  A  PR L++G  D S  TTG  E
Sbjct: 384 AIWSLNAQIPRTLQYGNADCSCWTTGCGE 412


>SPBC646.08c |||oxysterol binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +1

Query: 232 AESDQRHFSSDQRSVHS 282
           AES+  H SS Q+S HS
Sbjct: 227 AESNNEHLSSSQKSKHS 243


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 456 CGSVYHKPEENPPGGTL 406
           CGS YH  + NPP  T+
Sbjct: 53  CGSGYHGMQLNPPSKTI 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,915,596
Number of Sequences: 5004
Number of extensions: 32131
Number of successful extensions: 98
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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