Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f16
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)                       29   2.5  
SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)             29   2.5  
SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)               28   4.4  
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_28792| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.7  
SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_47026| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 24/77 (31%), Positives = 35/77 (45%)
 Frame = +2

Query: 53  TSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDE 232
           T+ P+N     G  + S     P  G T  ++  P  P  G   VPP+  +  S+G    
Sbjct: 103 TTVPYN-----GPTVPSNGTTVPSNGTTVPYNG-PTVPSNGA-TVPPNGATVPSNGT--- 152

Query: 233 PKATNGTSVATNGQSTP 283
              +NGT+V TNG + P
Sbjct: 153 TVPSNGTTVPTNGTTVP 169


>SB_7151| Best HMM Match : TCP (HMM E-Value=0.92)
          Length = 188

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 188 PPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283
           PPS++S      G+    TNG S   NG++TP
Sbjct: 103 PPSSSSLPELSSGNTHGETNGMSAKVNGRNTP 134


>SB_37209| Best HMM Match : Ion_trans (HMM E-Value=1.7e-05)
          Length = 822

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = +2

Query: 188 PPSATSTFSHGQGDEPKATNGTSVATNGQSTP 283
           PPS++S      G+    TNG S   NG++TP
Sbjct: 775 PPSSSSLPELSSGNTHGETNGMSAKVNGRNTP 806


>SB_57860| Best HMM Match : DUF1226 (HMM E-Value=1.5e-07)
          Length = 754

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/32 (37%), Positives = 14/32 (43%)
 Frame = +2

Query: 107 VLRPPGGGHTNIFDSEPEPPRTGRRAVPPSAT 202
           V   P       F  E EPP+  R+  PPS T
Sbjct: 318 VTTSPSNARRRFFGFETEPPQASRQCSPPSRT 349


>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1850

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/55 (29%), Positives = 21/55 (38%)
 Frame = +2

Query: 86   GARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTFSHGQGDEPKATNG 250
            G   ++    PP GG      +   P   G   VP +AT     G    P AT+G
Sbjct: 919  GGNETAPTATPPSGGGNETAPTATPPSGVGNETVP-TATPPSGSGNETAPTATSG 972


>SB_28792| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 1/55 (1%)
 Frame = +2

Query: 119 PGGGHTNIFDSEPEPPRTGRR-AVPPSATSTFSHGQGDEPKATNGTSVATNGQST 280
           P   H    D  P  P   R   +PP + +T   G   E  AT G  ++++   T
Sbjct: 134 PSDSHATRDDGMPPDPHATRDDGMPPDSHATRDDGMPSESHATRGDGMSSDSHVT 188


>SB_5862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2353

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 146  DSEPEPPRTGRRAVPPSATSTF 211
            + EP PPRT  R+ PPS +S +
Sbjct: 2020 EREPLPPRTKMRSRPPSMSSIY 2041


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,007,074
Number of Sequences: 59808
Number of extensions: 271349
Number of successful extensions: 935
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)