Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f16
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g02970.1 68416.m00292 phosphate-responsive 1 family protein s...    30   0.89 
At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing ...    28   4.8  
At5g54290.1 68418.m06762 cytochrome c biogenesis protein family ...    27   6.3  
At4g19515.1 68417.m02871 disease resistance family protein simil...    27   6.3  
At1g06070.1 68414.m00636 bZIP transcription factor, putative (bZ...    27   8.3  

>At3g02970.1 68416.m00292 phosphate-responsive 1 family protein
           similar to phi-1 (phosphate-induced gene) [Nicotiana
           tabacum] GI:3759184; contains Pfam profile PF04674:
           Phosphate-induced protein 1 conserved region
          Length = 332

 Score = 30.3 bits (65), Expect = 0.89
 Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = +2

Query: 47  KMTSTPFNVGLNDGARLSSRVLRPPGGGHTNIFDSEPEPPRTGRRAVPPSATSTF-SHG 220
           K  +TP+N  +      SS  +  P    T +F S   P  TGR  V P     F SHG
Sbjct: 251 KSETTPYNDDVKKNHESSSMYIVDPATKCTRVFGSGAFPGFTGRIRVDPITGGAFNSHG 309


>At1g78260.1 68414.m09120 RNA recognition motif (RRM)-containing
           protein similar to RNA recognition motif-containing
           protein SEB-4 GI:8895698 from [Xenopus laevis]; contains
           InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 287

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +3

Query: 60  HHSTLASMTELVYQAGCS-APPVVATLTSSIPNRSHRGPGAVPFHQAQRALSATD 221
           HH   +S + LVY +  S APP+   L+SS    S   P  VP  + +   +A +
Sbjct: 223 HHQRFSSPSFLVYPSNSSFAPPLQGVLSSS--TESEAVPQQVPAAEGEATTTAPE 275


>At5g54290.1 68418.m06762 cytochrome c biogenesis protein family low
           similarity to cytochrome c biogenesis protein CcdA
           [Paracoccus pantotrophus] GI:11095328; contains Pfam
           profile PF02683: Cytochrome C biogenesis protein
           transmembrane region
          Length = 354

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 240 AFGSSPC--PWLKVLVALGGTARRPVLGGS 157
           A  +SPC  P L  L+    T+R PV+GGS
Sbjct: 261 ALAASPCSTPVLATLLGYVATSRDPVIGGS 290


>At4g19515.1 68417.m02871 disease resistance family protein similar
           to downy mildew resistance protein RPP5 [Arabidopsis
           thaliana] GI:6449046; contains Pfam profile PF01582: TIR
           domain
          Length = 524

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 75  PTLNGVEVILFFYLSLHTSLLFDG 4
           P +N   + +FF L +H S+LF+G
Sbjct: 65  PKINDDHMFVFFDLKMHPSILFEG 88


>At1g06070.1 68414.m00636 bZIP transcription factor, putative
           (bZIP69) similar to transcriptional activator RF2a
           GB:AF005492 GI:2253277 from [Oryza sativa]; contains
           Pfam profile PF00170: bZIP transcription factor
          Length = 423

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +2

Query: 194 SATSTFSHGQGDEPKATNGTSVATNGQSTP 283
           SATST   G+  EP   N  +  +N QSTP
Sbjct: 125 SATSTSQMGEPSEPTWRNELASTSNLQSTP 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,575,388
Number of Sequences: 28952
Number of extensions: 198499
Number of successful extensions: 642
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 641
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)