Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f15
(517 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 29 0.41
SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 29 0.41
SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyc... 29 0.41
SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyce... 29 0.41
SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable element|Schiz... 29 0.41
SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomy... 29 0.41
SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 29 0.41
SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyc... 29 0.41
SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable element|Schizo... 29 0.41
SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomy... 29 0.41
SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 29 0.41
SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15 |Sc... 27 2.2
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M... 26 2.9
SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces... 26 3.8
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 3.8
SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces pombe... 25 5.1
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 6.7
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M... 25 8.9
>SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 297 PGDPETRLLGFITSLKITGQMPKTNLTLLQYTYRLQDLNLTNNQIERI 440
P D E + F+ + IT N + +YT + LNL NN+ +R+
Sbjct: 840 PKDSEDNSINFVNQISITDDFK--NQVVTEYTNDTKLLNLLNNEDKRV 885
>SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 297 PGDPETRLLGFITSLKITGQMPKTNLTLLQYTYRLQDLNLTNNQIERI 440
P D E + F+ + IT N + +YT + LNL NN+ +R+
Sbjct: 840 PKDSEDNSINFVNQISITDDFK--NQVVTEYTNDTKLLNLLNNEDKRV 885
>SPAC13D1.01c |Tf2-7||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 297 PGDPETRLLGFITSLKITGQMPKTNLTLLQYTYRLQDLNLTNNQIERI 440
P D E + F+ + IT N + +YT + LNL NN+ +R+
Sbjct: 840 PKDSEDNSINFVNQISITDDFK--NQVVTEYTNDTKLLNLLNNEDKRV 885
>SPAC27E2.08 |Tf2-6||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 297 PGDPETRLLGFITSLKITGQMPKTNLTLLQYTYRLQDLNLTNNQIERI 440
P D E + F+ + IT N + +YT + LNL NN+ +R+
Sbjct: 840 PKDSEDNSINFVNQISITDDFK--NQVVTEYTNDTKLLNLLNNEDKRV 885
>SPAC19D5.09c |Tf2-8|SPAC13D1.02c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 297 PGDPETRLLGFITSLKITGQMPKTNLTLLQYTYRLQDLNLTNNQIERI 440
P D E + F+ + IT N + +YT + LNL NN+ +R+
Sbjct: 840 PKDSEDNSINFVNQISITDDFK--NQVVTEYTNDTKLLNLLNNEDKRV 885
>SPAC2E1P3.03c |Tf2-3||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 297 PGDPETRLLGFITSLKITGQMPKTNLTLLQYTYRLQDLNLTNNQIERI 440
P D E + F+ + IT N + +YT + LNL NN+ +R+
Sbjct: 840 PKDSEDNSINFVNQISITDDFK--NQVVTEYTNDTKLLNLLNNEDKRV 885
>SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 297 PGDPETRLLGFITSLKITGQMPKTNLTLLQYTYRLQDLNLTNNQIERI 440
P D E + F+ + IT N + +YT + LNL NN+ +R+
Sbjct: 840 PKDSEDNSINFVNQISITDDFK--NQVVTEYTNDTKLLNLLNNEDKRV 885
>SPCC1020.14 |Tf2-12||retrotransposable element|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 297 PGDPETRLLGFITSLKITGQMPKTNLTLLQYTYRLQDLNLTNNQIERI 440
P D E + F+ + IT N + +YT + LNL NN+ +R+
Sbjct: 840 PKDSEDNSINFVNQISITDDFK--NQVVTEYTNDTKLLNLLNNEDKRV 885
>SPBC1289.17 |Tf2-11|SPBC8E4.11c|retrotransposable
element|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 297 PGDPETRLLGFITSLKITGQMPKTNLTLLQYTYRLQDLNLTNNQIERI 440
P D E + F+ + IT N + +YT + LNL NN+ +R+
Sbjct: 840 PKDSEDNSINFVNQISITDDFK--NQVVTEYTNDTKLLNLLNNEDKRV 885
>SPAPB15E9.03c |Tf2-5||retrotransposable element|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 297 PGDPETRLLGFITSLKITGQMPKTNLTLLQYTYRLQDLNLTNNQIERI 440
P D E + F+ + IT N + +YT + LNL NN+ +R+
Sbjct: 840 PKDSEDNSINFVNQISITDDFK--NQVVTEYTNDTKLLNLLNNEDKRV 885
>SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable
element|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1333
Score = 29.1 bits (62), Expect = 0.41
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = +3
Query: 297 PGDPETRLLGFITSLKITGQMPKTNLTLLQYTYRLQDLNLTNNQIERI 440
P D E + F+ + IT N + +YT + LNL NN+ +R+
Sbjct: 840 PKDSEDNSINFVNQISITDDFK--NQVVTEYTNDTKLLNLLNNEDKRV 885
>SPCC1183.01 |sec15|SPCC1672.13|exocyst complex subunit Sec15
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 26.6 bits (56), Expect = 2.2
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 7/54 (12%)
Frame = +3
Query: 363 KTNLTLLQYTYRLQDLNLTNNQIERIAGSPFY-------YLGKLETIDLSHKQD 503
KT+++L Y + D + +N+I +I+ P Y YLG L + S ++D
Sbjct: 237 KTSISLELYLLEMMDFSPLDNEIVKISFEPLYICLQVHSYLGLLSSFRSSFERD 290
>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 609
Score = 26.2 bits (55), Expect = 2.9
Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 477 FLICRGSKKVSQRFSQFDYLSN-LNPVAYMYIAIMSNSFSAF 355
F++ G+ K FS D N NP +Y Y A + SF F
Sbjct: 559 FVVANGAGKGGFDFSFVDSEGNSYNPTSYAYTATCTESFLPF 600
>SPCC1235.06 |sif1||Sad1 interacting factor 1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 257
Score = 25.8 bits (54), Expect = 3.8
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Frame = +3
Query: 141 PRENIHSLGQCAFKIECTT--NVRGIRLPNECLEAANFPVTVTVTLKNVAEDYYPGDPE 311
P ++ H+L FK++C + NV + N+ + ANF + + K ++ + G+ E
Sbjct: 83 PSQDYHNLESSPFKLQCDSPYNVPPENMFNQNPDFANFFQAMLQSAKEGSDTNFQGENE 141
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 25.8 bits (54), Expect = 3.8
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = -1
Query: 181 LKAHCPKLWMFSRGQLQATNTRLVRKTK 98
L AHCP LW +S+ +A + L KT+
Sbjct: 68 LFAHCPLLWKWSKVHEEAFDDFLRYKTR 95
>SPBC1105.04c |cbp1|abp1|CENP-B homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 25.4 bits (53), Expect = 5.1
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Frame = -2
Query: 189 TRF*RRTVLSCGCSHEGSCRLP--IPGWSGKPKV 94
TRF R L+ C+ G+ RLP + G+S P+V
Sbjct: 205 TRFKARITLTVCCNASGTERLPLWVIGYSQSPRV 238
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.0 bits (52), Expect = 6.7
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 267 TLKNVAEDYYPGDPETRLLGF 329
T+K V ED Y G+P R G+
Sbjct: 506 TIKEVLEDNYGGEPAGRAKGY 526
>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 757
Score = 24.6 bits (51), Expect = 8.9
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = +3
Query: 279 VAEDYYPGDPETRLLGFITSLKITGQMPKTNLT 377
VA + G P L + KI G +PKTNLT
Sbjct: 551 VANFFALGSP-LGLFQMLNGKKIAGPIPKTNLT 582
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,086,378
Number of Sequences: 5004
Number of extensions: 41474
Number of successful extensions: 129
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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