Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f15
         (517 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_7548| Best HMM Match : LRR_1 (HMM E-Value=8.7e-14)                  33   0.11 
SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)                       32   0.24 
SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.3  
SB_51072| Best HMM Match : Extensin_2 (HMM E-Value=5.2)                29   2.3  
SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)                 28   5.3  
SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)                27   6.9  
SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  

>SB_7548| Best HMM Match : LRR_1 (HMM E-Value=8.7e-14)
          Length = 384

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 14/38 (36%), Positives = 24/38 (63%)
 Frame = +3

Query: 387 YTYRLQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQ 500
           Y + L+ L + NN++  +  + F YL +L+ +DLSH Q
Sbjct: 105 YLFHLETLFINNNKLRELPDT-FCYLARLQKLDLSHNQ 141


>SB_26267| Best HMM Match : TSP_C (HMM E-Value=0)
          Length = 2996

 Score = 32.3 bits (70), Expect = 0.24
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = +3

Query: 396 RLQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQ 500
           +L  LNL+NN IE IA   F  L  L+ +DL H +
Sbjct: 162 QLVHLNLSNNAIESIASEAFSQLIHLKVLDLRHNK 196


>SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 825

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 375 TLLQYTYRLQDLNLTNNQIERIAGSPFYYLGKLETIDLSH 494
           T  ++   L+ LNL NN+I  I+   F  L  LE +DLS+
Sbjct: 150 TTFKHLLALKVLNLANNRIYHISQGSFSDLRSLEGLDLSN 189


>SB_51072| Best HMM Match : Extensin_2 (HMM E-Value=5.2)
          Length = 298

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 140 PS*EHPQLRTVRLQNRVYYQRQRNTPPQ*MSRGSQ 244
           PS  HP L  V L+  +YY R  + PP   S  SQ
Sbjct: 243 PSQYHPLLHPVHLRTTLYYIRSISEPPSTTSSPSQ 277



 Score = 28.3 bits (60), Expect = 4.0
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 140 PS*EHPQLRTVRLQNRVYYQRQRNTPPQ*MSRGSQ 244
           PS  HP L  V L++ +YY +  + PP   S  SQ
Sbjct: 211 PSQNHPLLHPVHLRSTLYYIQSISVPPLTTSSPSQ 245



 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/35 (42%), Positives = 17/35 (48%)
 Frame = +2

Query: 140 PS*EHPQLRTVRLQNRVYYQRQRNTPPQ*MSRGSQ 244
           PS  HP L  V L N  YY +  + PP   S  SQ
Sbjct: 103 PSQYHPLLHPVHLSNTPYYIQSISEPPLTTSSPSQ 137


>SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08)
          Length = 595

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 17/39 (43%), Positives = 20/39 (51%)
 Frame = +3

Query: 399 LQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQDXAIW 515
           ++ L L NN I  IA   F  L KL T+DLS      IW
Sbjct: 58  VESLILKNNSIRSIAKGAFNGLDKLLTLDLS-SNGLQIW 95


>SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069)
          Length = 639

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = -1

Query: 223 LGRRIPLTLVVHSILKAHCPKLWMFSRGQLQATNTRLVRKT 101
           + +RI +TL+  S+L  +  KLW+  R Q +   T  +R T
Sbjct: 453 IDKRI-ITLIYISLLARNLAKLWLLERHQYKTEFTAFMRDT 492


>SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 695

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 399 LQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQ 500
           L++L+LT   I  ++   FY+ G +E + L+H++
Sbjct: 263 LRNLHLTEKDINGLSAYFFYHPGDVEIMSLAHER 296


>SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1665

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = -2

Query: 483  QWFLICRGSKKVSQRFSQFDYLSNL 409
            +WF +CRG +   +  + F+ L  L
Sbjct: 1090 EWFQVCRGEENAGEMLAAFELLQEL 1114


>SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 203

 Score = 27.1 bits (57), Expect = 9.2
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 140 PS*EHPQLRTVRLQNRVYYQRQRNTPPQ*MSRGSQ 244
           PS  HP L  V L   +YY +  + PP   S  SQ
Sbjct: 20  PSQNHPLLHPVHLSTTLYYIQSISEPPLTTSSPSQ 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,387,152
Number of Sequences: 59808
Number of extensions: 306506
Number of successful extensions: 709
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 647
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 709
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1148326654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)