BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f15 (517 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_7548| Best HMM Match : LRR_1 (HMM E-Value=8.7e-14) 33 0.11 SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) 32 0.24 SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3 SB_51072| Best HMM Match : Extensin_2 (HMM E-Value=5.2) 29 2.3 SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) 28 5.3 SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069) 27 6.9 SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2 >SB_7548| Best HMM Match : LRR_1 (HMM E-Value=8.7e-14) Length = 384 Score = 33.5 bits (73), Expect = 0.11 Identities = 14/38 (36%), Positives = 24/38 (63%) Frame = +3 Query: 387 YTYRLQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQ 500 Y + L+ L + NN++ + + F YL +L+ +DLSH Q Sbjct: 105 YLFHLETLFINNNKLRELPDT-FCYLARLQKLDLSHNQ 141 >SB_26267| Best HMM Match : TSP_C (HMM E-Value=0) Length = 2996 Score = 32.3 bits (70), Expect = 0.24 Identities = 16/35 (45%), Positives = 21/35 (60%) Frame = +3 Query: 396 RLQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQ 500 +L LNL+NN IE IA F L L+ +DL H + Sbjct: 162 QLVHLNLSNNAIESIASEAFSQLIHLKVLDLRHNK 196 >SB_41825| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 825 Score = 29.9 bits (64), Expect = 1.3 Identities = 16/40 (40%), Positives = 23/40 (57%) Frame = +3 Query: 375 TLLQYTYRLQDLNLTNNQIERIAGSPFYYLGKLETIDLSH 494 T ++ L+ LNL NN+I I+ F L LE +DLS+ Sbjct: 150 TTFKHLLALKVLNLANNRIYHISQGSFSDLRSLEGLDLSN 189 >SB_51072| Best HMM Match : Extensin_2 (HMM E-Value=5.2) Length = 298 Score = 29.1 bits (62), Expect = 2.3 Identities = 15/35 (42%), Positives = 18/35 (51%) Frame = +2 Query: 140 PS*EHPQLRTVRLQNRVYYQRQRNTPPQ*MSRGSQ 244 PS HP L V L+ +YY R + PP S SQ Sbjct: 243 PSQYHPLLHPVHLRTTLYYIRSISEPPSTTSSPSQ 277 Score = 28.3 bits (60), Expect = 4.0 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = +2 Query: 140 PS*EHPQLRTVRLQNRVYYQRQRNTPPQ*MSRGSQ 244 PS HP L V L++ +YY + + PP S SQ Sbjct: 211 PSQNHPLLHPVHLRSTLYYIQSISVPPLTTSSPSQ 245 Score = 27.5 bits (58), Expect = 6.9 Identities = 15/35 (42%), Positives = 17/35 (48%) Frame = +2 Query: 140 PS*EHPQLRTVRLQNRVYYQRQRNTPPQ*MSRGSQ 244 PS HP L V L N YY + + PP S SQ Sbjct: 103 PSQYHPLLHPVHLSNTPYYIQSISEPPLTTSSPSQ 137 >SB_55414| Best HMM Match : 7tm_1 (HMM E-Value=4.3e-08) Length = 595 Score = 27.9 bits (59), Expect = 5.3 Identities = 17/39 (43%), Positives = 20/39 (51%) Frame = +3 Query: 399 LQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQDXAIW 515 ++ L L NN I IA F L KL T+DLS IW Sbjct: 58 VESLILKNNSIRSIAKGAFNGLDKLLTLDLS-SNGLQIW 95 >SB_14570| Best HMM Match : Mab-21 (HMM E-Value=0.00069) Length = 639 Score = 27.5 bits (58), Expect = 6.9 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = -1 Query: 223 LGRRIPLTLVVHSILKAHCPKLWMFSRGQLQATNTRLVRKT 101 + +RI +TL+ S+L + KLW+ R Q + T +R T Sbjct: 453 IDKRI-ITLIYISLLARNLAKLWLLERHQYKTEFTAFMRDT 492 >SB_44696| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 695 Score = 27.1 bits (57), Expect = 9.2 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = +3 Query: 399 LQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQ 500 L++L+LT I ++ FY+ G +E + L+H++ Sbjct: 263 LRNLHLTEKDINGLSAYFFYHPGDVEIMSLAHER 296 >SB_56890| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1665 Score = 27.1 bits (57), Expect = 9.2 Identities = 8/25 (32%), Positives = 14/25 (56%) Frame = -2 Query: 483 QWFLICRGSKKVSQRFSQFDYLSNL 409 +WF +CRG + + + F+ L L Sbjct: 1090 EWFQVCRGEENAGEMLAAFELLQEL 1114 >SB_55679| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 203 Score = 27.1 bits (57), Expect = 9.2 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +2 Query: 140 PS*EHPQLRTVRLQNRVYYQRQRNTPPQ*MSRGSQ 244 PS HP L V L +YY + + PP S SQ Sbjct: 20 PSQNHPLLHPVHLSTTLYYIQSISEPPLTTSSPSQ 54 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,387,152 Number of Sequences: 59808 Number of extensions: 306506 Number of successful extensions: 709 Number of sequences better than 10.0: 9 Number of HSP's better than 10.0 without gapping: 647 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 709 length of database: 16,821,457 effective HSP length: 77 effective length of database: 12,216,241 effective search space used: 1148326654 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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