Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f15
(517 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein. 33 0.16
AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical ... 33 0.16
U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical pr... 30 0.85
Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical pr... 30 1.1
Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical pr... 29 1.5
Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF016687-8|AAK72065.1| 737|Caenorhabditis elegans Hypothetical ... 29 2.6
AF016687-7|AAK72063.1| 881|Caenorhabditis elegans Hypothetical ... 29 2.6
Z81556-1|CAB04524.1| 965|Caenorhabditis elegans Hypothetical pr... 28 4.6
Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical pr... 28 4.6
AF022979-9|AAB69904.1| 466|Caenorhabditis elegans Hypothetical ... 28 4.6
Z35601-2|CAA84666.1| 259|Caenorhabditis elegans Hypothetical pr... 27 6.0
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 27 6.0
Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical pr... 27 8.0
Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical pr... 27 8.0
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 27 8.0
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 27 8.0
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 27 8.0
>AF304125-1|AAG50238.1| 542|Caenorhabditis elegans 1D304 protein.
Length = 542
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 396 RLQDLNLTNNQIERIAGSPFYYLGKLETIDLS 491
+L+ LNLTNNQ+ R+ G+ + L L+T+DLS
Sbjct: 238 KLETLNLTNNQLVRLPGNT-WSLPALKTLDLS 268
>AC024201-8|AAF36020.1| 542|Caenorhabditis elegans Hypothetical
protein Y71F9B.8 protein.
Length = 542
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/32 (50%), Positives = 24/32 (75%)
Frame = +3
Query: 396 RLQDLNLTNNQIERIAGSPFYYLGKLETIDLS 491
+L+ LNLTNNQ+ R+ G+ + L L+T+DLS
Sbjct: 238 KLETLNLTNNQLVRLPGNT-WSLPALKTLDLS 268
>U39996-8|AAA81094.2| 1102|Caenorhabditis elegans Hypothetical
protein C56E6.6 protein.
Length = 1102
Score = 30.3 bits (65), Expect = 0.85
Identities = 10/35 (28%), Positives = 26/35 (74%)
Frame = +3
Query: 396 RLQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQ 500
++++L+++ NQI+ + S F +G ++++DLS+ +
Sbjct: 169 KIRELDISYNQIQTVEDSSFETVGHMQSLDLSYNR 203
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 399 LQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQ 500
LQ L L++N I I F L L +DLSH +
Sbjct: 466 LQQLRLSHNNIRTITSMTFSNLRNLRYLDLSHNR 499
Score = 28.3 bits (60), Expect = 3.4
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = +3
Query: 348 TGQMPKTNLTLLQYTYRLQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQDXAIW 515
+ + K N LLQ L +++++N I + F KL I LSH +W
Sbjct: 591 SNSVEKINRKLLQDATELTSIDISHNGIIDVDSDAFCECRKLSHIKLSHNYIRNLW 646
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 399 LQDLNLTNNQIERIAGSPFYYLGKLETIDLSH 494
L+ LNL +N+I I+ F L L+ + LSH
Sbjct: 442 LKSLNLAHNKIHSISSRSFSDLDNLQQLRLSH 473
>Z81098-2|CAB03182.1| 961|Caenorhabditis elegans Hypothetical
protein K07A12.2 protein.
Length = 961
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 399 LQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQ 500
LQ L++ NN + + S F L L T+DL H +
Sbjct: 367 LQQLSIRNNTLTALDASSFAQLAHLTTLDLGHNK 400
>Z82264-1|CAB05159.1| 1566|Caenorhabditis elegans Hypothetical
protein C49C3.4 protein.
Length = 1566
Score = 29.5 bits (63), Expect = 1.5
Identities = 18/64 (28%), Positives = 33/64 (51%)
Frame = +3
Query: 153 IHSLGQCAFKIECTTNVRGIRLPNECLEAANFPVTVTVTLKNVAEDYYPGDPETRLLGFI 332
+ ++G F + +++ +R+P E+A PVT+TV+L V + P P LL +
Sbjct: 801 VRNIGSNRF-LSLGSSIGTLRIPKSPTESATVPVTITVSLSAV-DTNVPQLPRRLLLAIL 858
Query: 333 TSLK 344
+ K
Sbjct: 859 GNSK 862
>Z46937-1|CAA87056.2| 1036|Caenorhabditis elegans Hypothetical
protein F43C1.1 protein.
Length = 1036
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = +3
Query: 396 RLQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQ 500
RLQ LNL+NNQ++ + S L L+++D+S Q
Sbjct: 244 RLQYLNLSNNQLDTLPDS-ISELQNLQSLDISFNQ 277
>AF016687-8|AAK72065.1| 737|Caenorhabditis elegans Hypothetical
protein T21D12.9c protein.
Length = 737
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 399 LQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQ 500
L+ LNL+ N+++ + + L LE +DLS+ Q
Sbjct: 269 LKHLNLSTNRVQAVTEGWMFGLTSLEVLDLSYNQ 302
>AF016687-7|AAK72063.1| 881|Caenorhabditis elegans Hypothetical
protein T21D12.9a protein.
Length = 881
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 399 LQDLNLTNNQIERIAGSPFYYLGKLETIDLSHKQ 500
L+ LNL+ N+++ + + L LE +DLS+ Q
Sbjct: 269 LKHLNLSTNRVQAVTEGWMFGLTSLEVLDLSYNQ 302
>Z81556-1|CAB04524.1| 965|Caenorhabditis elegans Hypothetical
protein F58G1.1 protein.
Length = 965
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = +3
Query: 165 GQCAFKIECTTNVRGIRLPNECLEAANFPVTVTVTLKNVAE 287
G+C + E TNV GI + + L + V +T LKN E
Sbjct: 67 GKCGVEAEIQTNVFGIEMHQDSL-FYQYSVNITTELKNGKE 106
>Z81554-1|CAB04506.1| 838|Caenorhabditis elegans Hypothetical
protein F57G4.1 protein.
Length = 838
Score = 27.9 bits (59), Expect = 4.6
Identities = 23/96 (23%), Positives = 46/96 (47%), Gaps = 4/96 (4%)
Frame = +3
Query: 216 LPNECLEAANFPVTVT--VTLKNVAE-DYYPGDPETRLLGFITSLKITGQMPKTNLTLLQ 386
L +E L+ +F V + L + E ++P ++ GFI S + + TN + +
Sbjct: 151 LNSEALDTIHFRTDVDEEINLTKIMELPHWPNITCLKIEGFIVSETLENFLHLTNAKVTK 210
Query: 387 YTYRLQDLN-LTNNQIERIAGSPFYYLGKLETIDLS 491
++ +QDL L N + + F + KL+T +++
Sbjct: 211 HSITIQDLQILKKNFLGSQSEKKFVLVYKLDTGEIA 246
>AF022979-9|AAB69904.1| 466|Caenorhabditis elegans Hypothetical
protein T02B11.6 protein.
Length = 466
Score = 27.9 bits (59), Expect = 4.6
Identities = 19/40 (47%), Positives = 21/40 (52%)
Frame = -1
Query: 268 VTVTVTGKLAASRHSLGRRIPLTLVVHSILKAHCPKLWMF 149
+T VTG L S SLG R + VHSI A C LW F
Sbjct: 178 ITTAVTGFLCTS--SLGWRF--SFYVHSIAGALCFVLWYF 213
>Z35601-2|CAA84666.1| 259|Caenorhabditis elegans Hypothetical
protein R10E9.2 protein.
Length = 259
Score = 27.5 bits (58), Expect = 6.0
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Frame = +3
Query: 210 IRLPNE--CLEAANFPVTV----TVTLKNVAEDYYPGDPETRLLGFITSLK 344
I LP C+E+ + PV + T+T N+ +D P L+GF+ K
Sbjct: 129 INLPGSATCIESMDHPVGIEELDTITAVNIEKDALTAAPIGNLMGFVEEYK 179
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 25 RICCASHTEFRSERTVLRWRKVINFWFS*PAWYW*PATALVRTS 156
+ICCA+ TE + VL W KV ++ + W L+ TS
Sbjct: 401 KICCANGTEIAVKGRVLVWFKVKGVEYTEYVYVWNRNNNLLGTS 444
>Z81512-3|CAE46668.1| 3175|Caenorhabditis elegans Hypothetical protein
F25C8.3b protein.
Length = 3175
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 153 IHSLGQCAFKIECTTNVRGIRLPNECLEAANFPVTVTVTLK 275
+ +LGQ AF ++ T+ G+ + +E LEA V + + L+
Sbjct: 2738 MQALGQFAFSLDFVTSTEGMGVSSERLEAVLCHVLIPLFLR 2778
>Z81512-2|CAB04172.2| 3184|Caenorhabditis elegans Hypothetical protein
F25C8.3a protein.
Length = 3184
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/41 (31%), Positives = 24/41 (58%)
Frame = +3
Query: 153 IHSLGQCAFKIECTTNVRGIRLPNECLEAANFPVTVTVTLK 275
+ +LGQ AF ++ T+ G+ + +E LEA V + + L+
Sbjct: 2747 MQALGQFAFSLDFVTSTEGMGVSSERLEAVLCHVLIPLFLR 2787
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
protein F13B9.1c protein.
Length = 1609
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 140 PS*EHPQLRTVRLQNRVYYQRQRNTPPQ*MSRGSQLPRHCY 262
P+ +H + QN YY +Q PPQ + Q P+ Y
Sbjct: 37 PAPQHQWNPATQQQNNYYYHQQPAAPPQQHTNPQQPPQQQY 77
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
protein F13B9.1b protein.
Length = 1614
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 140 PS*EHPQLRTVRLQNRVYYQRQRNTPPQ*MSRGSQLPRHCY 262
P+ +H + QN YY +Q PPQ + Q P+ Y
Sbjct: 37 PAPQHQWNPATQQQNNYYYHQQPAAPPQQHTNPQQPPQQQY 77
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
protein F13B9.1a protein.
Length = 1632
Score = 27.1 bits (57), Expect = 8.0
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 140 PS*EHPQLRTVRLQNRVYYQRQRNTPPQ*MSRGSQLPRHCY 262
P+ +H + QN YY +Q PPQ + Q P+ Y
Sbjct: 37 PAPQHQWNPATQQQNNYYYHQQPAAPPQQHTNPQQPPQQQY 77
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,437,414
Number of Sequences: 27780
Number of extensions: 232956
Number of successful extensions: 637
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -