Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f14
         (548 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr...    28   1.0  
SPAC15A10.06 |||CPA1 sodium ion/proton antiporter|Schizosaccharo...    26   4.2  
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa...    25   7.3  
SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3 |Schiz...    25   9.7  

>SPCC16C4.19 ||SPCC5E4.08|RNase MRP|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 184

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 329 DFPKGQVSELATNLFLNC 276
           D  KG+VS L TNL +NC
Sbjct: 79  DLKKGEVSRLGTNLEINC 96


>SPAC15A10.06 |||CPA1 sodium ion/proton
           antiporter|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 175 KHYLLYFNSNITLFISDKYIFNVLVDIN 92
           KHY  +FN +    +S KY+F VL  ++
Sbjct: 301 KHYA-FFNMSYKAKLSTKYVFRVLAQLS 327


>SPAC19A8.08 |upf2||nonsense-mediated decay protein
           Upf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1049

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 12/34 (35%), Positives = 14/34 (41%)
 Frame = -3

Query: 378 SGFTNPFACNGPVSICRFSKGSGFRACHEPLFEL 277
           + FT P   N     C      G+  CHE  FEL
Sbjct: 112 TAFTGPMLAN---LYCALYPNPGYSLCHESYFEL 142


>SPCC790.02 |pep3|vps18, vps18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 900

 Score = 24.6 bits (51), Expect = 9.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -1

Query: 362 LSHVTGQFQYVDFPKGQVSELATNLFLNCE 273
           L H   + + +DF  GQ SE+A  +  N E
Sbjct: 793 LDHCMKRIEQLDFEIGQASEVAHEIQTNAE 822


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,138,977
Number of Sequences: 5004
Number of extensions: 42224
Number of successful extensions: 73
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 227943826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)