Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f14
         (548 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0488 + 3770410-3770774,3771197-3771284,3771383-3771466,377...    31   0.61 
12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269           28   5.6  
04_01_0476 + 6215401-6217445,6217538-6217630,6218031-6218133,621...    27   7.5  
04_01_0452 - 5859262-5859465,5859618-5859661,5859753-5859954,586...    27   9.9  

>11_01_0488 +
           3770410-3770774,3771197-3771284,3771383-3771466,
           3772128-3772224,3772324-3772411,3772800-3772848,
           3773044-3773238,3773713-3774159
          Length = 470

 Score = 31.1 bits (67), Expect = 0.61
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 167 IMFSRTLNVSANICKPPLFNQVWLPPKNGRLIRNSFHNSKRGSWQALKPDPL 322
           ++F   L++SA +     F+  W PPK     +NS H          + DP+
Sbjct: 245 VIFDYALHISARMVSAVAFDSYWSPPKPYERKQNSMHRFASPKSDEAEEDPI 296


>12_01_0401 + 3174256-3174326,3175138-3176822,3177049-3177269
          Length = 658

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = +2

Query: 152 IKIK*IMFSRTLNVSANICKPPLFNQVWLPPKN 250
           I+ K ++ S++L +  + C P  F   WL P N
Sbjct: 548 IRSKRVLMSKSLEMRTDFCYPSQFLHSWLLPSN 580


>04_01_0476 +
           6215401-6217445,6217538-6217630,6218031-6218133,
           6218237-6218254
          Length = 752

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = +1

Query: 397 LSSQFTRLCNMGI*ESTGSRFFTTTKTRNVAD 492
           +SSQ+  LC      S GS+   TT+++NVA+
Sbjct: 334 MSSQWENLCKPLQSTSKGSKLIVTTRSQNVAN 365


>04_01_0452 -
           5859262-5859465,5859618-5859661,5859753-5859954,
           5860905-5860949
          Length = 164

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 79  LQNEKRRKFENKILVSFSFSRTV 11
           L+N+K  + EN +L   SFSRTV
Sbjct: 33  LKNKKSARLENLVLARNSFSRTV 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,198,379
Number of Sequences: 37544
Number of extensions: 265704
Number of successful extensions: 577
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 567
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)