Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f14
         (548 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47207| Best HMM Match : NUDE_C (HMM E-Value=0)                      31   0.82 
SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)                 30   1.1  
SB_31379| Best HMM Match : Pou (HMM E-Value=0)                         29   2.5  

>SB_47207| Best HMM Match : NUDE_C (HMM E-Value=0)
          Length = 294

 Score = 30.7 bits (66), Expect = 0.82
 Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +2

Query: 299 QALKPDPLENLH---IETGPLHAKGLVKPLIFTVGVSAASLLG 418
           +A+  +PL NLH   I T PLHA     PL  +  +SA +++G
Sbjct: 164 EAIPSEPLANLHTNTIATSPLHAGYGSSPLTPSARISALNIVG 206


>SB_899| Best HMM Match : Alpha_L_fucos (HMM E-Value=0)
          Length = 1127

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 1/85 (1%)
 Frame = +2

Query: 257 LIRNSFHNSKRGSWQALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCV-IWE 433
           +I    HN     W    PDPL  +    GP+ A  + K  ++   ++   L G + +W+
Sbjct: 628 IINLGHHNGTVTMWSPSSPDPLVKMLCHRGPVQAIAIDKQGLY---MATTGLDGQMKMWD 684

Query: 434 YENLRVHASSLLRRPGTWLTAQQKK 508
               +   S L   P + LT  Q++
Sbjct: 685 VRTYKQLNSYLTFTPASSLTISQRR 709


>SB_31379| Best HMM Match : Pou (HMM E-Value=0)
          Length = 310

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 20/66 (30%), Positives = 29/66 (43%)
 Frame = -3

Query: 483 VPGLRSSEEA*TRRFSYSHITQPSKLAAETPTVKISGFTNPFACNGPVSICRFSKGSGFR 304
           +PGL SS  A +  +  +H       A+  PTV  S F  PF    P++I   + G    
Sbjct: 87  IPGLHSSHSADSGGYD-AHDILDQISASLQPTVSESQFDKPFETPSPINI---ASGHSLH 142

Query: 303 ACHEPL 286
           A H  +
Sbjct: 143 ALHSAI 148


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,266,713
Number of Sequences: 59808
Number of extensions: 294531
Number of successful extensions: 603
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)