Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f14
         (548 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC014058-1|AAH14058.1|  379|Homo sapiens presenilin associated, ...    48   3e-05
BC003653-1|AAH03653.1|  329|Homo sapiens presenilin associated, ...    48   3e-05
AF197937-1|AAG28519.1|  379|Homo sapiens presenilins associated ...    48   3e-05
BC027852-1|AAH27852.1|  170|Homo sapiens ribosomal protein L13A ...    29   8.1  

>BC014058-1|AAH14058.1|  379|Homo sapiens presenilin associated,
           rhomboid-like protein.
          Length = 379

 Score = 47.6 bits (108), Expect = 3e-05
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +2

Query: 302 ALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRR-P 478
           AL P P+E       P   + L+KPL FTVG +  +     IW+YE+L+    S      
Sbjct: 78  ALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDGIK 136

Query: 479 GTWL-TAQQKKSKSEPGPLKKWWN 547
             WL + + +K       + KWWN
Sbjct: 137 ADWLDSIRPQKEGDFRKEINKWWN 160


>BC003653-1|AAH03653.1|  329|Homo sapiens presenilin associated,
           rhomboid-like protein.
          Length = 329

 Score = 47.6 bits (108), Expect = 3e-05
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +2

Query: 302 ALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRR-P 478
           AL P P+E       P   + L+KPL FTVG +  +     IW+YE+L+    S      
Sbjct: 78  ALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDGIK 136

Query: 479 GTWL-TAQQKKSKSEPGPLKKWWN 547
             WL + + +K       + KWWN
Sbjct: 137 ADWLDSIRPQKEGDFRKEINKWWN 160


>AF197937-1|AAG28519.1|  379|Homo sapiens presenilins associated
           rhomboid-like protein protein.
          Length = 379

 Score = 47.6 bits (108), Expect = 3e-05
 Identities = 27/84 (32%), Positives = 39/84 (46%), Gaps = 2/84 (2%)
 Frame = +2

Query: 302 ALKPDPLENLHIETGPLHAKGLVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRR-P 478
           AL P P+E       P   + L+KPL FTVG +  +     IW+YE+L+    S      
Sbjct: 78  ALIP-PVEETVFYPSPYPIRSLIKPLFFTVGFTGCAFGSAAIWQYESLKSRVQSYFDGIK 136

Query: 479 GTWL-TAQQKKSKSEPGPLKKWWN 547
             WL + + +K       + KWWN
Sbjct: 137 ADWLDSIRPQKEGDFRKEINKWWN 160


>BC027852-1|AAH27852.1|  170|Homo sapiens ribosomal protein L13A
           pseudogene protein.
          Length = 170

 Score = 29.5 bits (63), Expect = 8.1
 Identities = 21/62 (33%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = +2

Query: 347 PLHAKG--LVKPLIFTVGVSAASLLGCVIWEYENLRVHASSLLRRPGTWLTAQQKKSKSE 520
           PLH  G  + KPL+FT  +    L         + RVH  S    P T+  A +   K+E
Sbjct: 14  PLHILGRFITKPLLFTNSMENFELTPS-----RHGRVHHQSCHEAPRTYKVAAEDSRKTE 68

Query: 521 PG 526
           PG
Sbjct: 69  PG 70


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,482,233
Number of Sequences: 237096
Number of extensions: 1573327
Number of successful extensions: 2620
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2620
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5421005376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)