BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f14 (548 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At4g36600.1 68417.m05195 late embryogenesis abundant domain-cont... 29 2.7 At5g49250.1 68418.m06096 hypothetical protein 28 4.7 At2g46220.1 68415.m05747 expressed protein 27 8.3 At1g55620.2 68414.m06367 voltage-gated chloride channel family p... 27 8.3 At1g55620.1 68414.m06366 voltage-gated chloride channel family p... 27 8.3 >At4g36600.1 68417.m05195 late embryogenesis abundant domain-containing protein / LEA domain-containing protein low similarity to SP|P20075 Embryonic protein DC-8 {Daucus carota}; contains Pfam profile PF02987: Late embryogenesis abundant protein Length = 335 Score = 28.7 bits (61), Expect = 2.7 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +2 Query: 470 RRPGTWLTAQQKKSKSEPGPLKKW 541 R+ WL +Q K++P PL+KW Sbjct: 6 RQQRIWLETKQSMLKTQPRPLRKW 29 >At5g49250.1 68418.m06096 hypothetical protein Length = 200 Score = 27.9 bits (59), Expect = 4.7 Identities = 10/37 (27%), Positives = 20/37 (54%) Frame = -1 Query: 548 SSTIFSMDQALIYFFFVVQSATFLVFVVVKKREPVDS 438 SS++F ++ + Q+ F+VF + +R+P S Sbjct: 85 SSSLFVFKHCTLFIISIFQTICFIVFAAIDRRDPHSS 121 >At2g46220.1 68415.m05747 expressed protein Length = 241 Score = 27.1 bits (57), Expect = 8.3 Identities = 10/24 (41%), Positives = 14/24 (58%) Frame = +2 Query: 230 VWLPPKNGRLIRNSFHNSKRGSWQ 301 VW P +N +IR + H RG W+ Sbjct: 156 VWQPTENTLMIRWTVHGIPRGPWE 179 >At1g55620.2 68414.m06367 voltage-gated chloride channel family protein contains Pfam profiles PF00654: Voltage gated chloride channel, PF00571: CBS domain Length = 781 Score = 27.1 bits (57), Expect = 8.3 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%) Frame = +2 Query: 392 GVSAASLLGCVIWEYENLR--VHASSLLRRPGTWLTAQQKKSK 514 G+ A G + W + N+ +H PG WL AQ +K Sbjct: 404 GIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLAQLAAAK 446 >At1g55620.1 68414.m06366 voltage-gated chloride channel family protein contains Pfam profiles PF00654: Voltage gated chloride channel, PF00571: CBS domain Length = 585 Score = 27.1 bits (57), Expect = 8.3 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%) Frame = +2 Query: 392 GVSAASLLGCVIWEYENLR--VHASSLLRRPGTWLTAQQKKSK 514 G+ A G + W + N+ +H PG WL AQ +K Sbjct: 208 GIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLAQLAAAK 250 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,003,080 Number of Sequences: 28952 Number of extensions: 220154 Number of successful extensions: 465 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 457 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 465 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1033331880 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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