Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f14
         (548 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g36600.1 68417.m05195 late embryogenesis abundant domain-cont...    29   2.7  
At5g49250.1 68418.m06096 hypothetical protein                          28   4.7  
At2g46220.1 68415.m05747 expressed protein                             27   8.3  
At1g55620.2 68414.m06367 voltage-gated chloride channel family p...    27   8.3  
At1g55620.1 68414.m06366 voltage-gated chloride channel family p...    27   8.3  

>At4g36600.1 68417.m05195 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to SP|P20075 Embryonic protein
           DC-8 {Daucus carota}; contains Pfam profile PF02987:
           Late embryogenesis abundant protein
          Length = 335

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 470 RRPGTWLTAQQKKSKSEPGPLKKW 541
           R+   WL  +Q   K++P PL+KW
Sbjct: 6   RQQRIWLETKQSMLKTQPRPLRKW 29


>At5g49250.1 68418.m06096 hypothetical protein
          Length = 200

 Score = 27.9 bits (59), Expect = 4.7
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = -1

Query: 548 SSTIFSMDQALIYFFFVVQSATFLVFVVVKKREPVDS 438
           SS++F      ++   + Q+  F+VF  + +R+P  S
Sbjct: 85  SSSLFVFKHCTLFIISIFQTICFIVFAAIDRRDPHSS 121


>At2g46220.1 68415.m05747 expressed protein
          Length = 241

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 230 VWLPPKNGRLIRNSFHNSKRGSWQ 301
           VW P +N  +IR + H   RG W+
Sbjct: 156 VWQPTENTLMIRWTVHGIPRGPWE 179


>At1g55620.2 68414.m06367 voltage-gated chloride channel family
           protein contains Pfam profiles PF00654: Voltage gated
           chloride channel, PF00571: CBS domain
          Length = 781

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 392 GVSAASLLGCVIWEYENLR--VHASSLLRRPGTWLTAQQKKSK 514
           G+ A    G + W + N+   +H       PG WL AQ   +K
Sbjct: 404 GIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLAQLAAAK 446


>At1g55620.1 68414.m06366 voltage-gated chloride channel family
           protein contains Pfam profiles PF00654: Voltage gated
           chloride channel, PF00571: CBS domain
          Length = 585

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
 Frame = +2

Query: 392 GVSAASLLGCVIWEYENLR--VHASSLLRRPGTWLTAQQKKSK 514
           G+ A    G + W + N+   +H       PG WL AQ   +K
Sbjct: 208 GIIALKYPGILYWGFTNVEEILHTGKSASAPGIWLLAQLAAAK 250


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,003,080
Number of Sequences: 28952
Number of extensions: 220154
Number of successful extensions: 465
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1033331880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)