SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f13
         (677 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1355 + 32851514-32851696,32852132-32852224,32852334-328524...   140   9e-34
04_04_1127 - 31098233-31098326,31099968-31100047,31100198-311003...   138   4e-33
03_06_0191 - 32228642-32228949,32229028-32230567                       33   0.28 
01_03_0196 - 13696056-13697448,13697676-13697713                       30   1.5  
01_03_0224 + 13940419-13941786                                         29   2.6  
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626...    29   4.5  
11_06_0608 - 25442883-25443206,25443420-25443623,25443831-254438...    28   6.0  

>04_04_1355 +
           32851514-32851696,32852132-32852224,32852334-32852485,
           32852702-32852837,32852947-32853102,32853233-32853312,
           32853475-32853568
          Length = 297

 Score =  140 bits (339), Expect = 9e-34
 Identities = 78/199 (39%), Positives = 120/199 (60%), Gaps = 5/199 (2%)
 Frame = +1

Query: 49  DELFDVKNAFYVGNYQQAINEAQSV---SPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL 219
           D LF ++N+FYVG YQ  I   Q++   +  +P    +RD+ LYRSYIA G++++V  E+
Sbjct: 8   DHLFGLRNSFYVGAYQAVITGVQAIPARAALSPDALAERDSLLYRSYIAIGSHQLVIDEI 67

Query: 220 KT-ADPMLQPLKSLVDYLLPDAN-KSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDN 393
              A   LQ ++ L  YL   A  K + +  ++  +A     SN I  +VA T+  HE +
Sbjct: 68  GPGAATPLQAVRLLTVYLSGGAGGKESAIRKLNELLADDAVGSNPILRLVAGTVLMHERD 127

Query: 394 YEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLI 573
           Y  ALK  ++  ++EL A  +Q  L M+R D A KQL+++Q +++D TLTQLA AW++L+
Sbjct: 128 YAGALKHTNSGGTMELLAMNVQICLQMHRSDHAEKQLRIMQQLDEDHTLTQLANAWVDLV 187

Query: 574 QGGPGIQDAHYSVMELSER 630
            GG  IQ+AH    +LSE+
Sbjct: 188 MGGSKIQEAHLIFQDLSEK 206


>04_04_1127 -
           31098233-31098326,31099968-31100047,31100198-31100353,
           31100481-31100616,31101195-31101346,31102307-31102390,
           31102495-31102656
          Length = 287

 Score =  138 bits (334), Expect = 4e-33
 Identities = 77/195 (39%), Positives = 120/195 (61%), Gaps = 1/195 (0%)
 Frame = +1

Query: 49  DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 225
           D LF+++N FY+G YQ AIN +  V       A +RDA ++RSY+A G+Y++V  E+  +
Sbjct: 5   DLLFNLRNLFYLGAYQAAINNSD-VPGLDADAAAERDAIVFRSYVALGSYQLVISEIDSS 63

Query: 226 ADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAA 405
           A   LQ +K L  YL  D  +SAIV+ +   ++     SN +  ++A  I+ HE +Y  A
Sbjct: 64  AATSLQAVKLLALYLSGD-KESAIVS-LKEWLSDSAVGSNPVLRLIAGIIFMHEQDYTEA 121

Query: 406 LKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 585
           LK  H+  +L+L A  +Q  + M+R D A KQLK++Q I++D TLTQLA AWL++  GG 
Sbjct: 122 LKHTHSGGTLDLHALNVQIFIKMHRSDYAEKQLKIMQQIDEDHTLTQLANAWLDIAVGGS 181

Query: 586 GIQDAHYSVMELSER 630
            I++A+    + +E+
Sbjct: 182 KIREAYLIFQDFAEK 196


>03_06_0191 - 32228642-32228949,32229028-32230567
          Length = 615

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 22/103 (21%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
 Frame = +1

Query: 220 KTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 399
           K   P +    S+++ L  +      V      V + TE+++ +  +    +   + N++
Sbjct: 459 KGVSPDVTTYTSVINMLCQEKKYEQAVEIFTKCVVQDTEVASSVLTVFILALC-KQGNFK 517

Query: 400 AALKILH----NAESLELRAFTLQCLLAMNRPDLARKQLKLLQ 516
            AL +L     N ES+      L+CL+ +   DLA + +K ++
Sbjct: 518 GALSVLSCIPSNVESVNSHVILLKCLIDVGEVDLAIEHIKSIR 560


>01_03_0196 - 13696056-13697448,13697676-13697713
          Length = 476

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +1

Query: 379 YHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQLK 507
           YH  + ++++K LH+ + L + A  + C+++   P L ++  K
Sbjct: 16  YHHPSIDSSVKPLHDYQQLLISAIGVNCIISQAAPKLTKRSDK 58


>01_03_0224 + 13940419-13941786
          Length = 455

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +1

Query: 451 TLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 585
           T +CL+   RP LAR  L ++ D+   G   ++   W + + GGP
Sbjct: 368 TAECLVLRRRPRLARTNLFVVTDVRRVG-FDRVDFGWGDPVYGGP 411


>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
            24963146-24963943,24964140-24964422,24964500-24964951,
            24965744-24965870,24965950-24966074,24966188-24966858,
            24966976-24967093,24967177-24967293,24967564-24967658,
            24968152-24968303,24968858-24968913,24969001-24969218,
            24969842-24970239,24970345-24970628,24970730-24970836,
            24970882-24970968,24971729-24971990,24972228-24972503,
            24973197-24973254,24973437-24973756,24973889-24973999,
            24974183-24974350,24974494-24974622,24974731-24974820,
            24974934-24975040,24975133-24975281,24975584-24975666,
            24975749-24975844,24975957-24976079,24976180-24976263,
            24976371-24976511,24976652-24976951,24977386-24977453,
            24977540-24977642,24979363-24979524,24979613-24981230,
            24981270-24981661,24981689-24981991,24982078-24982161,
            24982296-24982448,24982678-24982841,24982915-24983062,
            24983209-24983331,24983409-24983496,24983686-24983867
          Length = 4177

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 20/72 (27%), Positives = 36/72 (50%)
 Frame = +1

Query: 208  QQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHE 387
            Q+E++T D   Q L    DY +PD    AI  D+D ++    + + + + +V  T +Y  
Sbjct: 1317 QKEIQTGDTPHQELLDNRDYTIPDGAIVAI-RDLDQQMYVSIKNTGKKYQVV-GTYHYSL 1374

Query: 388  DNYEAALKILHN 423
             +  A  K+ H+
Sbjct: 1375 SSECALFKVKHH 1386


>11_06_0608 -
           25442883-25443206,25443420-25443623,25443831-25443859,
           25444335-25444557
          Length = 259

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 167 RNASRWSATRGVEGLTLCASLIA 99
           R   RW A  GV GL LCA+ ++
Sbjct: 39  REQWRWEAVEGVRGLWLCAAFLS 61


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,768,229
Number of Sequences: 37544
Number of extensions: 319099
Number of successful extensions: 774
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 770
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -