BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f13 (677 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_24897| Best HMM Match : Coatomer_E (HMM E-Value=4.2e-11) 73 2e-13 SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.6 >SB_24897| Best HMM Match : Coatomer_E (HMM E-Value=4.2e-11) Length = 155 Score = 72.9 bits (171), Expect = 2e-13 Identities = 44/120 (36%), Positives = 66/120 (55%), Gaps = 1/120 (0%) Frame = +1 Query: 43 DVDELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELK 222 DVDELFDVKNAF++GNYQ INEAQ QG Y +V E+ Sbjct: 6 DVDELFDVKNAFFIGNYQGCINEAQKF---------------------QGKYSVVMDEIS 44 Query: 223 -TADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYE 399 + P +QP++ L DYL + + I++ I+ ++ T N+ +L++AA++Y+HE E Sbjct: 45 GMSPPEVQPVRVLADYLQNPSRRDNILSSIEKKL--NTSDINDYYLLMAASVYFHEQGGE 102 >SB_52978| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 879 Score = 29.5 bits (63), Expect = 2.6 Identities = 18/40 (45%), Positives = 23/40 (57%) Frame = +1 Query: 382 HEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARKQ 501 H D EAAL +L S E+R TL+ L N+ DL RK+ Sbjct: 211 HVDQEEAALPMLLQRHSAEMR--TLRERLKRNKQDLIRKE 248 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 19,512,776 Number of Sequences: 59808 Number of extensions: 376317 Number of successful extensions: 813 Number of sequences better than 10.0: 2 Number of HSP's better than 10.0 without gapping: 757 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 812 length of database: 16,821,457 effective HSP length: 80 effective length of database: 12,036,817 effective search space used: 1745338465 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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