Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f13
(677 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical pr... 107 9e-24
Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical pr... 31 1.00
U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeas... 29 4.0
U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeas... 29 4.0
U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeas... 29 4.0
U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical pr... 28 7.0
U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical pr... 28 7.0
U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical pr... 28 7.0
>Z93382-3|CAB07613.1| 292|Caenorhabditis elegans Hypothetical
protein F45G2.4 protein.
Length = 292
Score = 107 bits (256), Expect = 9e-24
Identities = 64/196 (32%), Positives = 104/196 (53%), Gaps = 2/196 (1%)
Frame = +1
Query: 49 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKTA 228
D+LF ++N F++G+YQ I EA S ++D +LYRSYIAQG I +E+ A
Sbjct: 3 DKLFSIRNYFFLGSYQSCIGEALKFSSKNEEEKQEKDVYLYRSYIAQGQAFIPLKEIPAA 62
Query: 229 DPM--LQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEA 402
L ++ ++ A K I+A++ VA + +EI ++AATI D +
Sbjct: 63 TKSADLAAVRRYAEFRNNPAAKKKILAEVQEEVAS-RNIKSEIAAVLAATILNEADLSQD 121
Query: 403 ALKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGG 582
A + + E LE RA + L+ MN+ LA ++K + I++D TL+QLA A +
Sbjct: 122 AFRAVSRFEGLEARASKVFILIKMNKRKLAIGEVKKMNQIDEDATLSQLANALVTSFGAS 181
Query: 583 PGIQDAHYSVMELSER 630
++DA Y E+S++
Sbjct: 182 GKVKDALYIYSEMSDK 197
>Z49908-7|CAA90099.1| 294|Caenorhabditis elegans Hypothetical
protein C07E3.8 protein.
Length = 294
Score = 30.7 bits (66), Expect = 1.00
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +1
Query: 385 EDNYEAALKILHNAESLELRAFTLQCLLAMNR 480
E +E + H+ ESLE+ +FT+ CLL NR
Sbjct: 117 EGVFETPFEKPHHFESLEITSFTIDCLLYGNR 148
>U40409-3|ABO16455.1| 681|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform b
protein.
Length = 681
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 193 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 363
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 370 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 421
Query: 364 AATIYYHEDNYEAALKILHNAESLEL 441
A +Y +E YE+ALKIL + + ++
Sbjct: 422 LAHLYLYERKYESALKILMSCQDFQI 447
>U40409-2|AAA81388.3| 759|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform a
protein.
Length = 759
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 193 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 363
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 370 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 421
Query: 364 AATIYYHEDNYEAALKILHNAESLEL 441
A +Y +E YE+ALKIL + + ++
Sbjct: 422 LAHLYLYERKYESALKILMSCQDFQI 447
>U40409-1|ABO16456.1| 807|Caenorhabditis elegans Related to yeast
vacuolar proteinsorting factor protein 41, isoform c
protein.
Length = 807
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/86 (23%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Frame = +1
Query: 193 NYRIVQQELKTADPMLQPLKSLVD---YLLPDANKSAIVADIDARVAKGTELSNEIFLIV 363
N + ++ ++T P L ++D + + +KS +AD+D + + +
Sbjct: 418 NVKQFRKLVQTWSPDLYMTSFIIDRTQWRIQQISKSGNLADVDE--------TERVLMDA 469
Query: 364 AATIYYHEDNYEAALKILHNAESLEL 441
A +Y +E YE+ALKIL + + ++
Sbjct: 470 LAHLYLYERKYESALKILMSCQDFQI 495
>U61954-8|AAM98018.1| 1005|Caenorhabditis elegans Hypothetical
protein F41H10.3b protein.
Length = 1005
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 334 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 498
E +NE+F ++A+ I Y DN+ A++ ++L + Q L + + +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172
>U61954-7|AAK29803.1| 1140|Caenorhabditis elegans Hypothetical
protein F41H10.3a protein.
Length = 1140
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/55 (25%), Positives = 28/55 (50%)
Frame = +1
Query: 334 ELSNEIFLIVAATIYYHEDNYEAALKILHNAESLELRAFTLQCLLAMNRPDLARK 498
E +NE+F ++A+ I Y DN+ A++ ++L + Q L + + +K
Sbjct: 118 EDANELFRLIASCIIYSNDNWRASIDKSTLVDTLSMNILEKQRLKNLKQESSEQK 172
>U29535-9|AAK31453.2| 2148|Caenorhabditis elegans Hypothetical protein
C25H3.8 protein.
Length = 2148
Score = 27.9 bits (59), Expect = 7.0
Identities = 18/83 (21%), Positives = 36/83 (43%)
Frame = +1
Query: 175 SYIAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIF 354
+YI + YR + E T P +Q LK V++ K ++ V GT +
Sbjct: 1184 AYIRENGYRSILSEKFTLTPGVQALKLRVEH----KTKPTFYYNLGVEVRPGTGRYKDTQ 1239
Query: 355 LIVAATIYYHEDNYEAALKILHN 423
+++ + + ++ AL + H+
Sbjct: 1240 VVLLTSRFLLQNQSTVALSVCHH 1262
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,372,058
Number of Sequences: 27780
Number of extensions: 276599
Number of successful extensions: 637
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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