Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f13
(677 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g30630.1 68414.m03746 coatomer protein epsilon subunit family... 150 7e-37
At2g34840.1 68415.m04278 coatomer protein epsilon subunit family... 148 4e-36
At5g54540.1 68418.m06790 expressed protein 30 1.2
At5g56220.1 68418.m07016 expressed protein 30 1.6
At1g58440.1 68414.m06648 squalene monooxygenase, putative / squa... 30 1.6
At2g40130.2 68415.m04936 heat shock protein-related contains sim... 28 4.9
At2g40130.1 68415.m04935 heat shock protein-related contains sim... 28 4.9
At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger) fa... 28 4.9
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 27 8.6
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 27 8.6
At3g29075.1 68416.m03637 glycine-rich protein 27 8.6
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 27 8.6
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 27 8.6
>At1g30630.1 68414.m03746 coatomer protein epsilon subunit family
protein / COPE family protein similar to SP|O14579
Coatomer epsilon subunit (Epsilon-coat protein)
(Epsilon-COP) from Homo sapiens, SP|Q60445 from
Cricetulus griseus; ESTs gb|Z17908, gb|AA728673,
gb|N96555, gb|H76335, gb|AA712463, gb|W43247, gb|T45611,
gb|T21160, gb|T14119 and AI100483 come from this gene
Length = 292
Score = 150 bits (364), Expect = 7e-37
Identities = 77/195 (39%), Positives = 123/195 (63%), Gaps = 1/195 (0%)
Frame = +1
Query: 49 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 225
D LF+++N FY+G YQ AIN ++ + S + ++RD ++R+YIA G+Y++V E+ +
Sbjct: 8 DHLFNLRNHFYLGAYQAAINNSEIPNLSQEDI-VERDCLVHRAYIALGSYQLVISEIDEA 66
Query: 226 ADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAA 405
A LQ +K L YL NK + ++ + +A T +N I ++A TI+ HE++Y A
Sbjct: 67 AATPLQAVKLLAMYLSSPENKESTISSLREWLADPTVGNNAIIRLIAGTIFMHEEDYNEA 126
Query: 406 LKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 585
LK H+ +++L A +Q + M+R D A KQL+++Q I++D TLTQLA AWLNL GG
Sbjct: 127 LKHTHSGGTMDLHALNVQIFIKMHRSDFAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 186
Query: 586 GIQDAHYSVMELSER 630
IQ+A+ + SE+
Sbjct: 187 KIQEAYLIFQDFSEK 201
>At2g34840.1 68415.m04278 coatomer protein epsilon subunit family
protein / COPE family protein similar to SP|O14579
Coatomer epsilon subunit (Epsilon-coat protein)
(Epsilon-COP) from Homo sapiens, SP|Q60445 from
Cricetulus griseus
Length = 293
Score = 148 bits (358), Expect = 4e-36
Identities = 75/195 (38%), Positives = 123/195 (63%), Gaps = 1/195 (0%)
Frame = +1
Query: 49 DELFDVKNAFYVGNYQQAINEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQEL-KT 225
D LF+++N FY+G YQ AIN ++ ++ +P A++RD ++RSYIA G+Y++V E+ ++
Sbjct: 9 DHLFNLRNNFYLGAYQTAINNSE-IANLSPENAVERDCLVFRSYIALGSYQLVISEIDES 67
Query: 226 ADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEIFLIVAATIYYHEDNYEAA 405
A LQ +K L YL NK + ++ + +A T +N+ ++A I+ HE++Y
Sbjct: 68 AATPLQAVKLLAMYLSTPQNKESTISSLKEWLADSTIGNNDTLRLIAGIIFMHEEDYNET 127
Query: 406 LKILHNAESLELRAFTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGP 585
LK H +++L A +Q + M+R + A KQL+++Q I++D TLTQLA AWLNL GG
Sbjct: 128 LKHTHAGGTMDLYALNVQIFIKMHRAEYAEKQLRVMQQIDEDHTLTQLASAWLNLAVGGS 187
Query: 586 GIQDAHYSVMELSER 630
IQ+A+ + SE+
Sbjct: 188 KIQEAYLIFEDFSEK 202
>At5g54540.1 68418.m06790 expressed protein
Length = 297
Score = 30.3 bits (65), Expect = 1.2
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = +1
Query: 106 NEAQSVSPSTPLVALQRDAFLYRSYIAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDAN 285
+E ++V + P VALQ AFL + AQ + + K D +++ K L+ +L N
Sbjct: 142 SENRAVESAVPQVALQAFAFLSENTAAQTVVASIASDPKVWDAVMEN-KDLMKFL--QTN 198
Query: 286 KSAIVADIDA 315
K+A+ + +++
Sbjct: 199 KTAVSSQVES 208
>At5g56220.1 68418.m07016 expressed protein
Length = 973
Score = 29.9 bits (64), Expect = 1.6
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Frame = -2
Query: 661 ERPDQVPVNRG--VQITPSRCS-VRLGYQGRPE--LDSAMLVLAASKCRH-LQCPAATSV 500
E D VP G + + RCS R P +S +L KCR+ C ++TSV
Sbjct: 382 EESDVVPTRNGKFISLELGRCSDSRSEAWSDPNGGKNSLKRLLKTKKCRNNSNCKSSTSV 441
Query: 499 VCVQGL 482
VCV G+
Sbjct: 442 VCVNGV 447
>At1g58440.1 68414.m06648 squalene monooxygenase, putative /
squalene epoxidase, putative similar to SP|O65404 (SE
1,1), SP|O65402 (SE 1,2) 6566341 dbj AB008021.1 AB008021
Length = 531
Score = 29.9 bits (64), Expect = 1.6
Identities = 18/61 (29%), Positives = 27/61 (44%), Gaps = 1/61 (1%)
Frame = +1
Query: 85 GNYQQAINEAQSVSP-STPLVALQRDAFLYRSYIAQGNYRIVQQELKTADPMLQPLKSLV 261
GN + N + SP TP L DAF R + G + ++ +L+PL+ L
Sbjct: 322 GNIKSMPNRSMPASPYPTPGALLMGDAFNMRHPLTGGGMTVALADIVVLRNLLRPLRDLS 381
Query: 262 D 264
D
Sbjct: 382 D 382
>At2g40130.2 68415.m04936 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 910
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -3
Query: 531 VIFNVLQQLQLFACKVWSIHSQ*ALECERS*FQRF-SIMKDF*CSFIIIFMIVNCCSHNQ 355
++ + + L+ +VW I + + E +RF ++ KD+ + I + C HN+
Sbjct: 334 IVNRISELLRRHGRRVWLIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNK 393
Query: 354 EYFIGQFRTF 325
IG F F
Sbjct: 394 SSLIGSFVPF 403
>At2g40130.1 68415.m04935 heat shock protein-related contains
similarity to 101 kDa heat shock protein; HSP101
[Triticum aestivum] gi|11561808|gb|AAC83689
Length = 491
Score = 28.3 bits (60), Expect = 4.9
Identities = 17/70 (24%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = -3
Query: 531 VIFNVLQQLQLFACKVWSIHSQ*ALECERS*FQRF-SIMKDF*CSFIIIFMIVNCCSHNQ 355
++ + + L+ +VW I + + E +RF ++ KD+ + I + C HN+
Sbjct: 334 IVNRISELLRRHGRRVWLIGATTSNEVYEKMMRRFPNVEKDWDLQLLTITSLKPCLPHNK 393
Query: 354 EYFIGQFRTF 325
IG F F
Sbjct: 394 SSLIGSFVPF 403
>At1g08050.1 68414.m00879 zinc finger (C3HC4-type RING finger)
family protein low similarity to SP|P79263
Inter-alpha-trypsin inhibitor heavy chain H4 precursor
{Sus scrofa}; contains Pfam profiles PF00097: Zinc
finger, C3HC4 type (RING finger), PF00092: von
Willebrand factor type A domain
Length = 641
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 658 RPDQVPVNRGVQITPSRCSVRLGYQGRPELDSAMLVLAASKCRHLQC 518
RP P + G++ + RC++ L Y+ R E A+ S H C
Sbjct: 52 RPGSTPSSSGLRFSKGRCAICL-YEIRKEDGKAIFTAECSHSFHFDC 97
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 181 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 351
I QG R+ +Q+ D +LQ ++ + + + + DID +AKG E + E+
Sbjct: 644 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 698
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 181 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 351
I QG R+ +Q+ D +LQ ++ + + + + DID +AKG E + E+
Sbjct: 644 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 698
>At3g29075.1 68416.m03637 glycine-rich protein
Length = 294
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 4/48 (8%)
Frame = +1
Query: 43 DVDELFDVKNAFYVGNYQQAINEAQSVSPST----PLVALQRDAFLYR 174
DVD+ + Y G Y + +S+ PS PL +L DAF Y+
Sbjct: 10 DVDDFTEYDPMPYSGGYDITVTYGRSIPPSDETCYPLSSLSGDAFEYQ 57
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 27.5 bits (58), Expect = 8.6
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 181 IAQGNYRIVQQELKTADPMLQPLKSLVDYLLPDANKSAIVADIDARVAKGTELSNEI 351
I QG R+ +Q+ D +LQ ++ + + + + DID +AKG E + E+
Sbjct: 639 IQQG--RLAEQKTVNKDELLQMVRYGAEMVFSSKDSTITDEDIDRIIAKGEEATAEL 693
>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain
Length = 976
Score = 27.5 bits (58), Expect = 8.6
Identities = 11/48 (22%), Positives = 25/48 (52%)
Frame = +1
Query: 448 FTLQCLLAMNRPDLARKQLKLLQDIEDDGTLTQLAQAWLNLIQGGPGI 591
F+ +C ++ + +Q+K++ + DD TL + ++Q PG+
Sbjct: 446 FSFKCQISTSHVKSNTRQIKIICQVADDATLYGVCLHVSEIVQRPPGV 493
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,394,381
Number of Sequences: 28952
Number of extensions: 250308
Number of successful extensions: 570
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 557
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 566
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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