Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f11
         (277 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    19   7.3  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    19   9.7  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    19   9.7  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    19   9.7  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 19.4 bits (38), Expect = 7.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 131  RTTPVGCESVQ 163
            RTTP+ C++ Q
Sbjct: 1188 RTTPIHCQTEQ 1198


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 19.0 bits (37), Expect = 9.7
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 272 SQLQNFKRATGSVPQEKLSLDTYL*HNXS*MKIEDL 165
           SQL+N K+   ++ +E+  +  +L       K ED+
Sbjct: 471 SQLRNAKKVDEAILEERPDVKIFLPFRFLFYKPEDI 506


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
            candidate 46 protein.
          Length = 1451

 Score = 19.0 bits (37), Expect = 9.7
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 183  LTXIMSQICIE 215
            +T +MSQ C+E
Sbjct: 1250 ITFVMSQHCVE 1260


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 19.0 bits (37), Expect = 9.7
 Identities = 7/16 (43%), Positives = 7/16 (43%)
 Frame = -3

Query: 137 WFGLPQARGEPAGGDP 90
           W GL     EP G  P
Sbjct: 15  WMGLTPVSVEPTGFSP 30


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,794
Number of Sequences: 336
Number of extensions: 798
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 48
effective length of database: 106,457
effective search space used:  4577651
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)