Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f11
         (277 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyc...    27   0.49 
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   2.6  
SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51...    24   4.6  
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch...    23   6.1  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    23   6.1  
SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14 |Schizo...    23   8.0  

>SPBC3B9.04 |||mitochondrial methyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 248

 Score = 27.1 bits (57), Expect = 0.49
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +3

Query: 135 PHPLAVSLYNQIFDFHLTXIMSQICIEAKFFLRY 236
           P+  ++S+YNQI D +   I  +      +FLRY
Sbjct: 45  PNSNSISIYNQIADKYSRKITREEIFSGIYFLRY 78


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 2.6
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -1

Query: 139 CGSVYHKPEENPPGGTL 89
           CGS YH  + NPP  T+
Sbjct: 53  CGSGYHGMQLNPPSKTI 69


>SPAC23A1.18c |mrp51||mitochondrial ribosomal protein subunit L51-b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 291

 Score = 23.8 bits (49), Expect = 4.6
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +2

Query: 119 LVVNRTTPVGCESVQSNLRFSFNSHYVTN 205
           L+ +R TP  CES  SN+R    +H +++
Sbjct: 140 LINSRVTP-NCESNCSNIRRRLTAHIISS 167


>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1294

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 152  ESVQSNLRFSFNSHYVTNMYRG 217
            ES  S+ RF FNS   + +YRG
Sbjct: 955  ESYPSDSRFHFNSSSKSWLYRG 976


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 23.4 bits (48), Expect = 6.1
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -1

Query: 154 LTANGCGSVYHKPEENPP 101
           L  NGCG+ + K +++PP
Sbjct: 233 LLNNGCGADFVKTKQSPP 250


>SPAC4G8.05 |ppk14||serine/threonine protein kinase Ppk14
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 566

 Score = 23.0 bits (47), Expect = 8.0
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = +3

Query: 129 TEPHPLAVSLYNQIFDFHLTXIMSQICIEAKFF 227
           T  HP  V+LY+         +  + C+  +FF
Sbjct: 249 TSNHPFIVTLYHSFQSDEYLYLCMEYCMGGEFF 281


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 894,166
Number of Sequences: 5004
Number of extensions: 13541
Number of successful extensions: 31
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 61717020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)