Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f11
         (277 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_01_0252 + 2060214-2060587,2060710-2061166                           28   1.2  
03_01_0019 + 167900-168343,168567-168751,169076-169430                 27   2.8  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    27   2.8  
08_01_0251 - 2057136-2057589,2057962-2058332                           26   3.7  
08_01_0250 - 2053568-2054021,2054413-2054801                           26   3.7  
08_01_0248 - 2048077-2048530,2049015-2049388                           26   3.7  

>08_01_0252 + 2060214-2060587,2060710-2061166
          Length = 276

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -3

Query: 140 VWFGLPQARGEPAGGDPDA 84
           V++GL Q RG+ +GGD DA
Sbjct: 85  VFYGLAQCRGDVSGGDCDA 103


>03_01_0019 + 167900-168343,168567-168751,169076-169430
          Length = 327

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 154 LTANGCGSVYHKPEENPPG 98
           L A+GC + +HKP+  P G
Sbjct: 23  LAAHGCSAKHHKPKPTPGG 41


>01_01_0588 +
           4372877-4372949,4374328-4376262,4376940-4377015,
           4378900-4378970,4379038-4379144,4379241-4379711,
           4379791-4379976,4380132-4380425,4380820-4381434,
           4382219-4382615,4382768-4382850,4383397-4383567,
           4384046-4384243,4384754-4385314,4385401-4385460,
           4385553-4385869,4385980-4386403,4386539-4387006,
           4387093-4387209,4387306-4387427,4387506-4388247,
           4388453-4388485,4388625-4388879,4388975-4389160,
           4390115-4390453,4391293-4392045
          Length = 3017

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 110 LLGLVVNRTTPVGCESVQSNLR 175
           L+GLV+ R  PV CE  Q N++
Sbjct: 240 LIGLVLIRNEPVSCEVHQRNMK 261


>08_01_0251 - 2057136-2057589,2057962-2058332
          Length = 274

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 137 WFGLPQARGEPAGGDPDA 84
           ++GL Q RG+ +GGD DA
Sbjct: 85  FYGLAQCRGDVSGGDCDA 102


>08_01_0250 - 2053568-2054021,2054413-2054801
          Length = 280

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 137 WFGLPQARGEPAGGDPDA 84
           ++GL Q RG+ +GGD DA
Sbjct: 91  FYGLAQCRGDVSGGDCDA 108


>08_01_0248 - 2048077-2048530,2049015-2049388
          Length = 275

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -3

Query: 137 WFGLPQARGEPAGGDPDA 84
           ++GL Q RG+ +GGD DA
Sbjct: 86  FYGLAQCRGDVSGGDCDA 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,159,027
Number of Sequences: 37544
Number of extensions: 95054
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 14,793,348
effective HSP length: 69
effective length of database: 12,202,812
effective search space used: 268461864
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)