Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f11
         (277 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine rec...    29   0.47 
AC103567-8|AAL35729.1|  305|Caenorhabditis elegans Hypothetical ...    29   0.47 
Z66565-1|CAA91477.1|  324|Caenorhabditis elegans Hypothetical pr...    26   3.3  
Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical pr...    25   7.7  

>U13019-16|AAK84569.1|  311|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 6 protein.
          Length = 311

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
 Frame = +3

Query: 144 LAVSLYNQIFD---FHLTXIMSQICIEAKFFLR 233
           LA+SL N  FD   + LT  + QIC    FFLR
Sbjct: 66  LALSLLNLFFDIFYYRLTLFVPQICESFSFFLR 98


>AC103567-8|AAL35729.1|  305|Caenorhabditis elegans Hypothetical
           protein Y51F10.2 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 0.47
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -1

Query: 265 CRILKGQPEAYLKKNLASIHICDIMXVK*KSKI*LYRLTANGCGSVYHKPEEN 107
           CR +   P  Y++ N   I + D M  +    I    L   GC  VYH+ + N
Sbjct: 75  CRAVTQTPRNYIRSNYQLIELMDSMRGEADHNISF--LACVGCNGVYHEKDTN 125


>Z66565-1|CAA91477.1|  324|Caenorhabditis elegans Hypothetical
           protein T04F8.1 protein.
          Length = 324

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 95  PPRRVLLGLVVNRTTPVGC 151
           P + +L GLV++ +TPVGC
Sbjct: 268 PLQTILCGLVLSVSTPVGC 286


>Z82086-1|CAB04993.1|  738|Caenorhabditis elegans Hypothetical
           protein ZK228.1 protein.
          Length = 738

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -3

Query: 152 HSQRVWFGLPQARG 111
           H+ R WFGLP  +G
Sbjct: 549 HNHRYWFGLPSNQG 562


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,204,206
Number of Sequences: 27780
Number of extensions: 81666
Number of successful extensions: 107
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 12,740,198
effective HSP length: 69
effective length of database: 10,823,378
effective search space used: 238114316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)