BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f11 (277 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U13019-16|AAK84569.1| 311|Caenorhabditis elegans Serpentine rec... 29 0.47 AC103567-8|AAL35729.1| 305|Caenorhabditis elegans Hypothetical ... 29 0.47 Z66565-1|CAA91477.1| 324|Caenorhabditis elegans Hypothetical pr... 26 3.3 Z82086-1|CAB04993.1| 738|Caenorhabditis elegans Hypothetical pr... 25 7.7 >U13019-16|AAK84569.1| 311|Caenorhabditis elegans Serpentine receptor, class g (gamma)protein 6 protein. Length = 311 Score = 29.1 bits (62), Expect = 0.47 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 3/33 (9%) Frame = +3 Query: 144 LAVSLYNQIFD---FHLTXIMSQICIEAKFFLR 233 LA+SL N FD + LT + QIC FFLR Sbjct: 66 LALSLLNLFFDIFYYRLTLFVPQICESFSFFLR 98 >AC103567-8|AAL35729.1| 305|Caenorhabditis elegans Hypothetical protein Y51F10.2 protein. Length = 305 Score = 29.1 bits (62), Expect = 0.47 Identities = 16/53 (30%), Positives = 23/53 (43%) Frame = -1 Query: 265 CRILKGQPEAYLKKNLASIHICDIMXVK*KSKI*LYRLTANGCGSVYHKPEEN 107 CR + P Y++ N I + D M + I L GC VYH+ + N Sbjct: 75 CRAVTQTPRNYIRSNYQLIELMDSMRGEADHNISF--LACVGCNGVYHEKDTN 125 >Z66565-1|CAA91477.1| 324|Caenorhabditis elegans Hypothetical protein T04F8.1 protein. Length = 324 Score = 26.2 bits (55), Expect = 3.3 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +2 Query: 95 PPRRVLLGLVVNRTTPVGC 151 P + +L GLV++ +TPVGC Sbjct: 268 PLQTILCGLVLSVSTPVGC 286 >Z82086-1|CAB04993.1| 738|Caenorhabditis elegans Hypothetical protein ZK228.1 protein. Length = 738 Score = 25.0 bits (52), Expect = 7.7 Identities = 8/14 (57%), Positives = 10/14 (71%) Frame = -3 Query: 152 HSQRVWFGLPQARG 111 H+ R WFGLP +G Sbjct: 549 HNHRYWFGLPSNQG 562 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 5,204,206 Number of Sequences: 27780 Number of extensions: 81666 Number of successful extensions: 107 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 107 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 107 length of database: 12,740,198 effective HSP length: 69 effective length of database: 10,823,378 effective search space used: 238114316 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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