Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f11
         (277 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       20   4.9  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               19   8.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    19   8.6  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 20.2 bits (40), Expect = 4.9
 Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
 Frame = -1

Query: 133 SVYHKPE-ENPPGGTLTRL 80
           +V+ K E ++P GG LTRL
Sbjct: 660 AVHIKQEGQSPEGGKLTRL 678


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = +2

Query: 98  PRRVLLGLVVNRTTPVGCESVQSNLRFSFNSHYVTNMYRG 217
           P  ++ GL+     P   + +   L  S N   VTN Y G
Sbjct: 638 PSHIMAGLLDKFFFPKWLQVLALWLNHSPNYDQVTNWYMG 677


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 19.4 bits (38), Expect = 8.6
 Identities = 6/18 (33%), Positives = 10/18 (55%)
 Frame = +2

Query: 116 GLVVNRTTPVGCESVQSN 169
           G+++    P+GCE    N
Sbjct: 424 GVIIPDDPPIGCECKTCN 441


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,005
Number of Sequences: 438
Number of extensions: 967
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 48
effective length of database: 125,319
effective search space used:  5388717
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.3 bits)