Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f11
         (277 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g42850.1 68415.m05306 cytochrome P450 family protein similar ...    28   1.0  
At1g32550.1 68414.m04017 ferredoxin family protein similar to fe...    27   1.3  
At5g64710.2 68418.m08135 expressed protein contains Pfam profile...    25   9.4  
At5g64710.1 68418.m08134 expressed protein contains Pfam profile...    25   9.4  
At4g00231.1 68417.m00026 ataxin-related contains weak similarity...    25   9.4  

>At2g42850.1 68415.m05306 cytochrome P450 family protein similar to
           taxane 13-alpha-hydroxylase (GI:17148242) {Taxus
           cuspidata}
          Length = 485

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 89  QGPPRRVLLGLVVNRTTPVGCESVQSNLRFSFNSHYVTNMYRG 217
           QG   RVL G+V N  + +G ES+   L  +   H+ T  +RG
Sbjct: 136 QGEKHRVLRGIVANSLSYIGLESLIPKLCDTVKFHHETE-WRG 177


>At1g32550.1 68414.m04017 ferredoxin family protein similar to
           ferredoxin from Synechocystis sp. [GI:48019]; contains
           Pfam profile PF00111 2Fe-2S iron-sulfur cluster binding
           domain
          Length = 181

 Score = 27.5 bits (58), Expect = 1.3
 Identities = 13/34 (38%), Positives = 16/34 (47%)
 Frame = +2

Query: 149 CESVQSNLRFSFNSHYVTNMYRG*VFLEVRFRLP 250
           C S+Q    F  N  Y+TN  RG       FR+P
Sbjct: 10  CTSLQKK-NFPINRRYITNFRRGATTATCEFRIP 42


>At5g64710.2 68418.m08135 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 716

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 95  PPRRVLLGLVVNRTTPVGCESVQS 166
           P  R+  G +V  +TPV CES  S
Sbjct: 599 PEARIESGHIVTSSTPVPCESDSS 622


>At5g64710.1 68418.m08134 expressed protein contains Pfam profile
           PF04396: Protein of unknown function, DUF537
          Length = 841

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +2

Query: 95  PPRRVLLGLVVNRTTPVGCESVQS 166
           P  R+  G +V  +TPV CES  S
Sbjct: 724 PEARIESGHIVTSSTPVPCESDSS 747


>At4g00231.1 68417.m00026 ataxin-related contains weak similarity to
           Ataxin-10 (Spinocerebellar ataxia type 10 protein)
           (Brain protein E46 homolog) (Swiss-Prot:Q9UBB4) [Homo
           sapiens]
          Length = 475

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 153 SLYNQIFDFHLTXIMSQICIEAKFFLRYAS 242
           S    + D+ L  ++S+IC+E  +FL+  S
Sbjct: 192 SSVGSVEDYWLKLLVSRICVEDGYFLKLFS 221


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,816,081
Number of Sequences: 28952
Number of extensions: 73309
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 12,070,560
effective HSP length: 69
effective length of database: 10,072,872
effective search space used: 221603184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)