Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f10
         (698 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    27   2.0  
SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103 |Sch...    27   3.4  
SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.5  
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p...    26   6.0  
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|...    26   6.0  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    25   7.9  

>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = +3

Query: 336 EEFEEDRADGAKVKSVCTFEGNTLKQVQKAPDGLEVTYVREFGPEEMKAVMTAKDV 503
           EE  ED   G    + CT + N    + +  D +E   +   GP E++  M+  DV
Sbjct: 220 EETNEDDLLGQS-PTACTTDANIDNSIPENSDKIEEVSIESSGPSEVEDEMSEYDV 274


>SPBP35G2.09 |usp103|yhc1|U1 snRNP-associated protein Usp103
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 508 APESTRSSKRTLLRGRESVPPIHEHPAAQ 594
           AP++T SS   L + ++S+P  +EH  A+
Sbjct: 128 APQTTASSNTQLTQQQQSLPQTNEHQRAR 156


>SPAC22H10.02 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 158

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +2

Query: 527 PVKGLYSEVGSRCRRFTNIP 586
           P+ GL+  VGSR R+ + IP
Sbjct: 114 PLSGLHQNVGSRTRKSSGIP 133


>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -3

Query: 126 INFIDLRERFLIRLFLAPAKTRMNSLLWS 40
           ++FID RER ++  F  P +T  N   WS
Sbjct: 135 LSFIDARERRIMETFQQPCET--NECCWS 161


>SPBC1826.01c |mot1||TATA-binding protein associated factor
           Mot1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1953

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 563 CRRFTNIPRHNYVYLASILYI 625
           C +F  +PR NY  L S L++
Sbjct: 860 CDQFATVPRENYANLVSQLHV 880


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 545 SEVGSRCRRFTNIPRHNYVYLASILYISPF*LFCKTNFSFHI-SHRLPFEL 694
           SE+ ++ RR     +H Y+YLA  L+     L C   F F++ ++R  F L
Sbjct: 52  SEIEAKKRRRK---KHRYIYLAVCLFFLASVLSCAIIFRFYLHTNRENFSL 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,559
Number of Sequences: 5004
Number of extensions: 52200
Number of successful extensions: 147
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)