Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f09
         (607 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58485| Best HMM Match : COX2 (HMM E-Value=0)                       158   3e-39
SB_14168| Best HMM Match : COX2 (HMM E-Value=0)                       158   3e-39
SB_12233| Best HMM Match : COX2 (HMM E-Value=0)                       111   6e-25

>SB_58485| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  158 bits (384), Expect = 3e-39
 Identities = 80/202 (39%), Positives = 110/202 (54%), Gaps = 2/202 (0%)
 Frame = +3

Query: 6   FFXDXXXXXXXXXXXXVRYLIXSLFFNKYINRFLLEGQIIXLXXTIIPAFTXXXXXXXXX 185
           FF D            V +LI      K   R+L++G ++ +  TIIPA           
Sbjct: 30  FFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSL 89

Query: 186 XXXXXXXXXXXPLITXXSIGHQ*Y*RYEYSDFNN--IEFDSYIXPSXEIKXNEFRLLDVD 359
                      P +T  ++GHQ Y  YEYSD+ +  +EFDSY+ P+ ++   +FRLL+VD
Sbjct: 90  KLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVD 149

Query: 360 XXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNFFIXRPGIFFGQCXEI 539
                          TA DVIHS  +P+L +K+DA PGRLNQT FFI RPG+F+GQC EI
Sbjct: 150 NRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEI 209

Query: 540 CEANXSFXPMVXESISIKNFIN 605
           C AN SF P+V E++S+  +IN
Sbjct: 210 CGANHSFMPIVIEAVSLDKYIN 231


>SB_14168| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 239

 Score =  158 bits (384), Expect = 3e-39
 Identities = 80/202 (39%), Positives = 110/202 (54%), Gaps = 2/202 (0%)
 Frame = +3

Query: 6   FFXDXXXXXXXXXXXXVRYLIXSLFFNKYINRFLLEGQIIXLXXTIIPAFTXXXXXXXXX 185
           FF D            V +LI      K   R+L++G ++ +  TIIPA           
Sbjct: 30  FFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSL 89

Query: 186 XXXXXXXXXXXPLITXXSIGHQ*Y*RYEYSDFNN--IEFDSYIXPSXEIKXNEFRLLDVD 359
                      P +T  ++GHQ Y  YEYSD+ +  +EFDSY+ P+ ++   +FRLL+VD
Sbjct: 90  KLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVD 149

Query: 360 XXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNFFIXRPGIFFGQCXEI 539
                          TA DVIHS  +P+L +K+DA PGRLNQT FFI RPG+F+GQC EI
Sbjct: 150 NRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKRPGVFYGQCSEI 209

Query: 540 CEANXSFXPMVXESISIKNFIN 605
           C AN SF P+V E++S+  +IN
Sbjct: 210 CGANHSFMPIVIEAVSLDKYIN 231


>SB_12233| Best HMM Match : COX2 (HMM E-Value=0)
          Length = 219

 Score =  111 bits (266), Expect = 6e-25
 Identities = 61/173 (35%), Positives = 85/173 (49%), Gaps = 2/173 (1%)
 Frame = +3

Query: 6   FFXDXXXXXXXXXXXXVRYLIXSLFFNKYINRFLLEGQIIXLXXTIIPAFTXXXXXXXXX 185
           FF D            V +LI      K   R+L++G ++ +  TIIPA           
Sbjct: 30  FFHDQVMFILTIIIVAVLWLIIKALSGKAYYRYLVDGTLLEVIWTIIPAIILIFIAFPSL 89

Query: 186 XXXXXXXXXXXPLITXXSIGHQ*Y*RYEYSDFNN--IEFDSYIXPSXEIKXNEFRLLDVD 359
                      P +T  ++GHQ Y  YEYSD+ +  +EFDSY+ P+ ++   +FRLL+VD
Sbjct: 90  KLLYLMDEVMDPALTIKAVGHQWYWSYEYSDYQSETLEFDSYMVPTTDLNQGDFRLLEVD 149

Query: 360 XXXXXXXXXXXXXXXTATDVIHS*TIPSLGIKVDANPGRLNQTNFFIXRPGIF 518
                          TA DVIHS  +P+L +K+DA PGRLNQT FFI +   F
Sbjct: 150 NRLVVPINTHVRVLITAADVIHSFAVPALAVKMDAVPGRLNQTGFFIKKTWSF 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,938,637
Number of Sequences: 59808
Number of extensions: 105964
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)