BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f08 (251 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co... 24 3.5 >SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6 |Schizosaccharomyces pombe|chr 2|||Manual Length = 675 Score = 23.8 bits (49), Expect = 3.5 Identities = 18/58 (31%), Positives = 27/58 (46%) Frame = -3 Query: 210 TQLVSSKNSKGEHIHGFKSRSG*NHNSHNVF*S*YETLLIKVK*IEEKSKHIHFVRKH 37 +QL+ KNS I +K+ N + + YET + IEEK K+I K+ Sbjct: 94 SQLLKVKNS----IDSYKNEWSKKTNDAQILLNSYETFCEEEALIEEKLKNIEIFEKN 147 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 755,177 Number of Sequences: 5004 Number of extensions: 10877 Number of successful extensions: 17 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 17 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 17 length of database: 2,362,478 effective HSP length: 60 effective length of database: 2,062,238 effective search space used: 47431474 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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