Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f08
         (251 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0707 - 35655084-35655215,35656088-35656229,35656358-356564...    26   4.8  
12_01_0461 + 3618414-3618782,3619664-3619794,3620177-3620294,362...    25   8.4  
07_03_1223 + 24985730-24985916,24986008-24986039,24986790-249868...    25   8.4  

>03_06_0707 -
           35655084-35655215,35656088-35656229,35656358-35656485,
           35656852-35656944,35657183-35657252,35657324-35657445,
           35658143-35658265,35659453-35659710,35659995-35660074,
           35660244-35660389,35660773-35660906,35661001-35661137,
           35663013-35663135,35663521-35663590,35663925-35664050,
           35664166-35664393
          Length = 703

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 188 IAKESIYTVLNLGQGKTTIHTMFF 117
           IA + IY   N+G GKT +  MF+
Sbjct: 308 IAPKGIYLYGNVGSGKTMLMDMFY 331


>12_01_0461 +
           3618414-3618782,3619664-3619794,3620177-3620294,
           3620602-3620654,3620758-3620807,3620912-3621010,
           3621511-3621620,3621773-3621900,3622071-3622161,
           3622610-3622693,3622863-3623083,3623449-3623527,
           3624134-3624283,3624326-3624470,3624604-3624983,
           3625096-3625197
          Length = 769

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = +2

Query: 68  FSSIYFTFINNVSYYD*KTLCELWFYPDRDLKPCICSPLLFL 193
           F S  FT + N  Y D K+  E W  P   + P +  P++++
Sbjct: 391 FYSALFTPVRNTIYLDKKSKKERWGEP--SISPGLGQPMVYI 430


>07_03_1223 +
           24985730-24985916,24986008-24986039,24986790-24986879,
           24987441-24987535,24987635-24987839,24988011-24988080,
           24988564-24988642,24988859-24988926,24989114-24989202,
           24989284-24989354,24989493-24989578,24989674-24989750
          Length = 382

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 15/62 (24%), Positives = 25/62 (40%)
 Frame = -1

Query: 194 LKIAKESIYTVLNLGQGKTTIHTMFFSRSMKRY*XXXXXXXXXXNTSILYASTTPQAASE 15
           +K+  +S+Y +L  G G+ T+   +   S                  ILY +T P  A  
Sbjct: 74  IKLLGQSLYYLLTTGSGQQTLGEEYCDISQVATSHGLPPTPARRILFILYQTTVPYLAER 133

Query: 14  VS 9
           +S
Sbjct: 134 IS 135


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,452,601
Number of Sequences: 37544
Number of extensions: 58395
Number of successful extensions: 114
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 14,793,348
effective HSP length: 62
effective length of database: 12,465,620
effective search space used: 261778020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)