Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f08
         (251 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)                30   0.34 
SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)                       27   1.8  
SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)                        27   1.8  
SB_21546| Best HMM Match : UBA (HMM E-Value=7)                         25   9.8  

>SB_20056| Best HMM Match : zf-C3HC4 (HMM E-Value=9e-11)
          Length = 471

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +3

Query: 114 TKKHCVNCGFTLTEI*NRVYALLC 185
           T K+C  CGF +TE  N V  LLC
Sbjct: 51  TGKNCKKCGFKITEESNSVNILLC 74


>SB_48424| Best HMM Match : PSI (HMM E-Value=0.4)
          Length = 175

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 12  YFACCLWCCAC 44
           +F CC++CC C
Sbjct: 102 FFGCCIYCCCC 112


>SB_4370| Best HMM Match : PSI (HMM E-Value=0.4)
          Length = 175

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +3

Query: 12  YFACCLWCCAC 44
           +F CC++CC C
Sbjct: 102 FFGCCIYCCCC 112


>SB_21546| Best HMM Match : UBA (HMM E-Value=7)
          Length = 146

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +2

Query: 128 CELWFYPDRDLKPCIC 175
           C  +F P  D KPC+C
Sbjct: 28  CYYYFLPWGDTKPCVC 43


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,549,229
Number of Sequences: 59808
Number of extensions: 80470
Number of successful extensions: 158
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 16,821,457
effective HSP length: 60
effective length of database: 13,232,977
effective search space used: 304358471
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)