BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f07 (601 letters) Database: rice 37,544 sequences; 14,793,348 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value 01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437... 33 0.23 06_03_1220 - 28505306-28508497 29 3.8 11_02_0049 - 7751779-7751925,7752046-7752189,7752398-7752489,775... 27 8.7 11_01_0060 + 453615-454030,454086-455862 27 8.7 02_01_0703 + 5251901-5251950,5252783-5253554 27 8.7 >01_06_0705 + 31342236-31342415,31343086-31343391,31343555-31343796, 31343927-31344122,31344419-31344602,31344984-31345147, 31345454-31345981,31346530-31346630,31347619-31347634, 31347834-31347941,31348028-31348078,31349059-31349100, 31349442-31349541,31350039-31350256,31350367-31350807, 31350916-31351043,31351131-31351992 Length = 1288 Score = 32.7 bits (71), Expect = 0.23 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = +3 Query: 285 MVVFCLAAVIFPMGF--HVDEIGGQPYQLPNSHQVGISYILFVLSLWITVISELFAGKVC 458 ++V A I+ GF I G P +P+ +VG+ +L ++S+ I + E+ +V Sbjct: 1085 LIVLVFAVPIYERGFVPFARRITGHPNGIPHLQRVGVGLVLSIVSMAIAAVVEVRRKRVA 1144 Query: 459 LPH 467 H Sbjct: 1145 ARH 1147 >06_03_1220 - 28505306-28508497 Length = 1063 Score = 28.7 bits (61), Expect = 3.8 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%) Frame = +2 Query: 275 FCSNGCI--LLSGSHISHGFPRG*DWRTTLSITKQSSSWNL-LHIICSLPLDNSDI 433 + +NG + L SH G P+ DWR LSI + +S L +H C + + DI Sbjct: 857 YMANGSLHDWLHESHAGDGAPQQLDWRARLSIARGASRGVLYIHDQCKPQIVHRDI 912 >11_02_0049 - 7751779-7751925,7752046-7752189,7752398-7752489, 7752745-7752811,7753148-7753264,7753318-7753462, 7753574-7753689,7753789-7753865,7753995-7754076, 7754180-7754317,7754781-7754999 Length = 447 Score = 27.5 bits (58), Expect = 8.7 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%) Frame = +3 Query: 258 YARWVGFAAMVVFCLAA-VIFPM---GFHVDEIG 347 + W+G AM+VF LAA IFP G++ D G Sbjct: 363 FLEWIGMNAMLVFVLAAQAIFPAFVNGWYYDSPG 396 >11_01_0060 + 453615-454030,454086-455862 Length = 730 Score = 27.5 bits (58), Expect = 8.7 Identities = 13/47 (27%), Positives = 24/47 (51%) Frame = -1 Query: 355 GCPPISSTWKPMGNMTAAKQNTTIAAKPTHLAYGTTFLSK*LEANSI 215 GC P T+ + ++ AK+N ++ + LAY + L AN++ Sbjct: 274 GCKPNEVTFSVLLRLSGAKENESLGLQIVALAYRHGYTDNVLVANAV 320 >02_01_0703 + 5251901-5251950,5252783-5253554 Length = 273 Score = 27.5 bits (58), Expect = 8.7 Identities = 11/25 (44%), Positives = 13/25 (52%) Frame = +2 Query: 263 KMGWFCSNGCILLSGSHISHGFPRG 337 KM C++GC G H H FP G Sbjct: 12 KMNSTCTSGCPFGEGCHFLHHFPGG 36 Database: rice Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 14,793,348 Number of sequences in database: 37,544 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 15,579,244 Number of Sequences: 37544 Number of extensions: 320486 Number of successful extensions: 619 Number of sequences better than 10.0: 5 Number of HSP's better than 10.0 without gapping: 614 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 619 length of database: 14,793,348 effective HSP length: 78 effective length of database: 11,864,916 effective search space used: 1435654836 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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