Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f07
         (601 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0705 + 31342236-31342415,31343086-31343391,31343555-313437...    33   0.23 
06_03_1220 - 28505306-28508497                                         29   3.8  
11_02_0049 - 7751779-7751925,7752046-7752189,7752398-7752489,775...    27   8.7  
11_01_0060 + 453615-454030,454086-455862                               27   8.7  
02_01_0703 + 5251901-5251950,5252783-5253554                           27   8.7  

>01_06_0705 + 31342236-31342415,31343086-31343391,31343555-31343796,
            31343927-31344122,31344419-31344602,31344984-31345147,
            31345454-31345981,31346530-31346630,31347619-31347634,
            31347834-31347941,31348028-31348078,31349059-31349100,
            31349442-31349541,31350039-31350256,31350367-31350807,
            31350916-31351043,31351131-31351992
          Length = 1288

 Score = 32.7 bits (71), Expect = 0.23
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +3

Query: 285  MVVFCLAAVIFPMGF--HVDEIGGQPYQLPNSHQVGISYILFVLSLWITVISELFAGKVC 458
            ++V   A  I+  GF      I G P  +P+  +VG+  +L ++S+ I  + E+   +V 
Sbjct: 1085 LIVLVFAVPIYERGFVPFARRITGHPNGIPHLQRVGVGLVLSIVSMAIAAVVEVRRKRVA 1144

Query: 459  LPH 467
              H
Sbjct: 1145 ARH 1147


>06_03_1220 - 28505306-28508497
          Length = 1063

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
 Frame = +2

Query: 275  FCSNGCI--LLSGSHISHGFPRG*DWRTTLSITKQSSSWNL-LHIICSLPLDNSDI 433
            + +NG +   L  SH   G P+  DWR  LSI + +S   L +H  C   + + DI
Sbjct: 857  YMANGSLHDWLHESHAGDGAPQQLDWRARLSIARGASRGVLYIHDQCKPQIVHRDI 912


>11_02_0049 -
           7751779-7751925,7752046-7752189,7752398-7752489,
           7752745-7752811,7753148-7753264,7753318-7753462,
           7753574-7753689,7753789-7753865,7753995-7754076,
           7754180-7754317,7754781-7754999
          Length = 447

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 4/34 (11%)
 Frame = +3

Query: 258 YARWVGFAAMVVFCLAA-VIFPM---GFHVDEIG 347
           +  W+G  AM+VF LAA  IFP    G++ D  G
Sbjct: 363 FLEWIGMNAMLVFVLAAQAIFPAFVNGWYYDSPG 396


>11_01_0060 + 453615-454030,454086-455862
          Length = 730

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -1

Query: 355 GCPPISSTWKPMGNMTAAKQNTTIAAKPTHLAYGTTFLSK*LEANSI 215
           GC P   T+  +  ++ AK+N ++  +   LAY   +    L AN++
Sbjct: 274 GCKPNEVTFSVLLRLSGAKENESLGLQIVALAYRHGYTDNVLVANAV 320


>02_01_0703 + 5251901-5251950,5252783-5253554
          Length = 273

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = +2

Query: 263 KMGWFCSNGCILLSGSHISHGFPRG 337
           KM   C++GC    G H  H FP G
Sbjct: 12  KMNSTCTSGCPFGEGCHFLHHFPGG 36


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,579,244
Number of Sequences: 37544
Number of extensions: 320486
Number of successful extensions: 619
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 614
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 619
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)