Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f07
         (601 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)                    30   1.2  
SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_53535| Best HMM Match : zf-C2H2 (HMM E-Value=4.8e-32)               27   8.8  
SB_41572| Best HMM Match : MFS_1 (HMM E-Value=0.082)                   27   8.8  
SB_57472| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.8  
SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13)                 27   8.8  

>SB_9550| Best HMM Match : GPS (HMM E-Value=1.6e-11)
          Length = 1771

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 17/40 (42%), Positives = 24/40 (60%)
 Frame = +2

Query: 293 ILLSGSHISHGFPRG*DWRTTLSITKQSSSWNLLHIICSL 412
           IL+ GSHIS+G      ++TTL  TK+S S     ++ SL
Sbjct: 183 ILIDGSHISNGRDHREFFKTTLKDTKESRSKQASLLLTSL 222


>SB_39921| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 210

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 15/33 (45%), Positives = 16/33 (48%)
 Frame = -1

Query: 346 PISSTWKPMGNMTAAKQNTTIAAKPTHLAYGTT 248
           P  +T  P GNMTAA   TT A   T  A   T
Sbjct: 14  PAETTAVPAGNMTAAPMETTAAPDATTAAPDAT 46


>SB_53535| Best HMM Match : zf-C2H2 (HMM E-Value=4.8e-32)
          Length = 323

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -3

Query: 470 KVWETHFPSKKFRYHCYPKGENK*YVGDS 384
           + W+  F SK F+Y CY +   + + G+S
Sbjct: 241 RTWKCSFCSKAFQYPCYLRRHMRSHTGES 269


>SB_41572| Best HMM Match : MFS_1 (HMM E-Value=0.082)
          Length = 460

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 90  LMWSCMTLYNRPQVCFTPDLQPEW 161
           L+W+ M ++ R +V   PDLQ  W
Sbjct: 437 LIWALMPIFRRAKVFPLPDLQKTW 460


>SB_57472| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 315

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 429 SLLSKGRE-QIICRRFQLDDCLVIDKVVLQSHPRGNPWEI 313
           S+LSKG+  ++ C+R     CLV  K++     +G  W I
Sbjct: 3   SVLSKGQPWRLFCQRANNGVCLVKGKIMAYICSKGKSWRI 42


>SB_57440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 172 LFAFSLAAYASPPLLYY*LQVILTEMWSHMQDGLVLQQWLYS 297
           L+   + A  + PL Y+   + L  + +H+  G+V+  W YS
Sbjct: 295 LYVICITAVYNSPLAYHFANISLYYISAHLLVGIVVIYWTYS 336


>SB_29714| Best HMM Match : 7tm_1 (HMM E-Value=3.3e-13)
          Length = 473

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/42 (28%), Positives = 22/42 (52%)
 Frame = +1

Query: 172 LFAFSLAAYASPPLLYY*LQVILTEMWSHMQDGLVLQQWLYS 297
           L+   + A  + PL Y+   + L  + +H+  G+V+  W YS
Sbjct: 158 LYVICITAVYNSPLAYHFANISLYYISAHLLVGIVVIYWTYS 199


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,431,836
Number of Sequences: 59808
Number of extensions: 381591
Number of successful extensions: 732
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 731
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1451595000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)