Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f07
         (601 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC027604-1|AAH27604.1|   91|Homo sapiens chromosome 16 open read...    46   1e-04
AF031174-1|AAC72013.1| 1215|Homo sapiens Ig-like membrane protei...    30   7.1  

>BC027604-1|AAH27604.1|   91|Homo sapiens chromosome 16 open reading
           frame 52 protein.
          Length = 91

 Score = 46.0 bits (104), Expect = 1e-04
 Identities = 20/70 (28%), Positives = 28/70 (40%)
 Frame = +3

Query: 84  LGLMWSCMTLYNRPQVCFTPDLQPEWXXXXXXXXXXXXXXXXXXXXXASSHFDRNVVPYA 263
           +GL+  C T++ R + C  P L PEW                      +SH+ R    YA
Sbjct: 17  VGLVRQCQTIHGRDRTCIPPRLPPEWVTTLFFIIMGIISLTVTCGLLVASHWRREATKYA 76

Query: 264 RWVGFAAMVV 293
           RW+ F    V
Sbjct: 77  RWIAFTGKCV 86


>AF031174-1|AAC72013.1| 1215|Homo sapiens Ig-like membrane protein
            protein.
          Length = 1215

 Score = 29.9 bits (64), Expect = 7.1
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -2

Query: 336  PRGNPWEI*LPLSRIQPLLQNQPILHMGP 250
            P GNPWE  L   R+ P+L    +L   P
Sbjct: 1065 PEGNPWEGRLRFQRLSPVLYRLTVLQASP 1093


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 87,785,139
Number of Sequences: 237096
Number of extensions: 1935030
Number of successful extensions: 2647
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2646
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6297951520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)