Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f07
         (601 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040646-2|AAK31538.1|  275|Caenorhabditis elegans Hypothetical ...    29   2.5  
U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z82274-12|CAJ76931.1|  304|Caenorhabditis elegans Hypothetical p...    28   5.9  
Z82274-11|CAB54268.2|  315|Caenorhabditis elegans Hypothetical p...    28   5.9  
AF324487-1|AAK49908.1|  315|Caenorhabditis elegans JC8.12-like p...    28   5.9  

>AF040646-2|AAK31538.1|  275|Caenorhabditis elegans Hypothetical
           protein H17B01.3 protein.
          Length = 275

 Score = 29.1 bits (62), Expect = 2.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 306 AVIFPMGFHVDEIGGQPYQLPNSHQV 383
           ++ F +G   +E G  PY++P +HQV
Sbjct: 224 SIQFGLGIARNECGSDPYEIPGAHQV 249


>U50197-2|AAA91255.2|  624|Caenorhabditis elegans Hypothetical
           protein F25E2.2 protein.
          Length = 624

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = -3

Query: 473 LKVWETHFPSKKFRYHCYPKGENK*Y 396
           L+ WETH   K F+YHC   G N  Y
Sbjct: 66  LQQWETH-NEKWFKYHCVIDGTNAQY 90


>Z82274-12|CAJ76931.1|  304|Caenorhabditis elegans Hypothetical
           protein JC8.12b protein.
          Length = 304

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 354 PYQLPNSHQVGISYILFVLSLWITVISELFAGKVCLPHF 470
           PY       + I  IL+ +S WITV S  F G + +P+F
Sbjct: 55  PYCFEKGRHIVIPSILYTISQWITVAS--FEG-IAMPNF 90


>Z82274-11|CAB54268.2|  315|Caenorhabditis elegans Hypothetical
           protein JC8.12a protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 354 PYQLPNSHQVGISYILFVLSLWITVISELFAGKVCLPHF 470
           PY       + I  IL+ +S WITV S  F G + +P+F
Sbjct: 66  PYCFEKGRHIVIPSILYTISQWITVAS--FEG-IAMPNF 101


>AF324487-1|AAK49908.1|  315|Caenorhabditis elegans JC8.12-like
           protein protein.
          Length = 315

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +3

Query: 354 PYQLPNSHQVGISYILFVLSLWITVISELFAGKVCLPHF 470
           PY       + I  IL+ +S WITV S  F G + +P+F
Sbjct: 66  PYCFEKGRHIVIPSILYTISQWITVAS--FEG-IAMPNF 101


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,840,925
Number of Sequences: 27780
Number of extensions: 296167
Number of successful extensions: 617
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 604
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 617
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)