Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f07
         (601 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex det...    22   4.0  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   4.0  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   4.0  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   4.0  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   9.2  
AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin prepr...    21   9.2  

>DQ325081-1|ABD14095.1|  186|Apis mellifera complementary sex
           determiner protein.
          Length = 186

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 353 LSSNLIHVETHGKYDCR*AEYNHCCK 276
           LS+  IH   + KY+     YN+ CK
Sbjct: 85  LSNRTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 353 LSSNLIHVETHGKYDCR*AEYNHCCK 276
           LS+  IH   + KY+     YN+ CK
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 353 LSSNLIHVETHGKYDCR*AEYNHCCK 276
           LS+  IH   + KY+     YN+ CK
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 4.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -3

Query: 353 LSSNLIHVETHGKYDCR*AEYNHCCK 276
           LS+  IH   + KY+     YN+ CK
Sbjct: 85  LSNKTIHNNNNYKYNYNNNNYNNNCK 110


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 568 FRSQGTHKLKRIFFANFIHLL 506
           FRS  THK+       FIH+L
Sbjct: 333 FRSPQTHKMAPWVKRVFIHIL 353


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 568 FRSQGTHKLKRIFFANFIHLL 506
           FRS  THK+       FIH+L
Sbjct: 333 FRSPQTHKMAPWVKRVFIHIL 353


>AB201717-1|BAD90662.1|  107|Apis mellifera apime-corazonin
           preprohormone protein.
          Length = 107

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 396 ILFVLSLWITVI 431
           ILF+LSL IT++
Sbjct: 8   ILFILSLTITIV 19


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,265
Number of Sequences: 438
Number of extensions: 3449
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)