BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f07 (601 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi... 34 0.063 At2g05290.1 68415.m00557 expressed protein similar to zinc finge... 31 0.77 At2g39710.1 68415.m04872 aspartyl protease family protein contai... 30 1.3 At3g06550.1 68416.m00761 O-acetyltransferase-related similar to ... 28 5.4 At3g12350.1 68416.m01540 F-box family protein ; similar to SKP1... 27 7.2 At2g37730.1 68415.m04627 fringe-related protein similarity to pr... 27 9.5 At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g... 27 9.5 >At2g41570.1 68415.m05137 hypothetical protein similar to zinc finger protein [Arabidopsis thaliana] GI:976277 Length = 418 Score = 34.3 bits (75), Expect = 0.063 Identities = 13/49 (26%), Positives = 30/49 (61%) Frame = +1 Query: 226 LQVILTEMWSHMQDGLVLQQWLYSA*RQSYFPWVSTWMRLEDNLINYQT 372 L+++ T +W+ + +V+++W+ + + Y ++ WMRL + +NY T Sbjct: 88 LEILKTGVWTQDEWCVVMERWIEKS-TEEYLMFLPVWMRLRNIPVNYYT 135 >At2g05290.1 68415.m00557 expressed protein similar to zinc finger protein [Arabidopsis thaliana] GI:976277 Length = 383 Score = 30.7 bits (66), Expect = 0.77 Identities = 13/54 (24%), Positives = 31/54 (57%) Frame = +1 Query: 229 QVILTEMWSHMQDGLVLQQWLYSA*RQSYFPWVSTWMRLEDNLINYQTVIKLES 390 +V+ T +W+ G+V+++W+ +Y ++ W+RL + +N+ T ++S Sbjct: 91 EVLKTGVWTQDDWGVVMERWVEDL-PPNYLMFLLIWLRLRNIPVNHYTQATIKS 143 >At2g39710.1 68415.m04872 aspartyl protease family protein contains profile Pfam PF00026: Eukaryotic aspartyl protease; contains Prosite PS00141: Eukaryotic and viral aspartyl proteases active site.; Length = 442 Score = 29.9 bits (64), Expect = 1.3 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%) Frame = -2 Query: 420 SKGREQIICRRFQLDDCLVIDKVVLQSHPRGNPW-EI*LPLSRI 292 S+G+E++ C F D L I+ V+ H + N W E L SR+ Sbjct: 380 SEGKEEVYCFTFGNSDLLGIEAFVIGHHHQQNVWMEFDLAKSRV 423 >At3g06550.1 68416.m00761 O-acetyltransferase-related similar to O-acetyltransferase (GI:17063556) [Cryptococcus neoformans var. neoformans]; contains 7 transmembrane domains Length = 419 Score = 27.9 bits (59), Expect = 5.4 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%) Frame = +1 Query: 229 QVILTEMWSHMQDGLVLQQWLYSA*RQSYFPWVSTWM-RLEDNLINYQTVIK 381 Q+ L W H + GL W+ Y P V +WM +LE+ + ++ IK Sbjct: 330 QLPLLHEW-HFRSGLDRYIWIIGMLYAYYHPTVESWMDKLEEAEMKFRVAIK 380 >At3g12350.1 68416.m01540 F-box family protein ; similar to SKP1 interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250 Length = 422 Score = 27.5 bits (58), Expect = 7.2 Identities = 11/24 (45%), Positives = 16/24 (66%) Frame = +1 Query: 151 NLNGFWHLFAFSLAAYASPPLLYY 222 NL GFW L + A +SPPL+++ Sbjct: 85 NLIGFWRLCGRANPAASSPPLVFF 108 >At2g37730.1 68415.m04627 fringe-related protein similarity to predicted proteins + similar to hypothetical protein GB:AAC23643 [Arabidopsis thaliana] + weak similarity to Fringe [Schistocerca gregaria](GI:6573138);Fringe encodes an extracellular protein that regulates Notch signalling. Length = 532 Score = 27.1 bits (57), Expect = 9.5 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%) Frame = +3 Query: 258 YARWVGFAAMVVFCLAAVIFPM----GFHVDEIGGQPYQLPNSHQV 383 YA G + CL+ + P+ GFH +I G PY L +H V Sbjct: 266 YASLYGSDQKIEACLSEIGVPLTKELGFHQVDIRGNPYGLLAAHPV 311 >At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-glucan synthase 1 nearly identical to callose synthase 1 catalytic subunit [Arabidopsis thaliana] GI:13649388 Length = 1922 Score = 27.1 bits (57), Expect = 9.5 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%) Frame = +3 Query: 357 YQL-PNSHQVGISYILFVLSLWITVISELFA 446 YQ+ S++ ++YIL +S+W V++ LFA Sbjct: 1641 YQIFGQSYRGVVTYILITVSIWFMVVTWLFA 1671 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,032,650 Number of Sequences: 28952 Number of extensions: 274097 Number of successful extensions: 549 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 541 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 549 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1187288784 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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