Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f07
         (601 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41570.1 68415.m05137 hypothetical protein similar to zinc fi...    34   0.063
At2g05290.1 68415.m00557 expressed protein similar to zinc finge...    31   0.77 
At2g39710.1 68415.m04872 aspartyl protease family protein contai...    30   1.3  
At3g06550.1 68416.m00761 O-acetyltransferase-related similar to ...    28   5.4  
At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1...    27   7.2  
At2g37730.1 68415.m04627 fringe-related protein similarity to pr...    27   9.5  
At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-g...    27   9.5  

>At2g41570.1 68415.m05137 hypothetical protein similar to zinc
           finger protein [Arabidopsis thaliana] GI:976277
          Length = 418

 Score = 34.3 bits (75), Expect = 0.063
 Identities = 13/49 (26%), Positives = 30/49 (61%)
 Frame = +1

Query: 226 LQVILTEMWSHMQDGLVLQQWLYSA*RQSYFPWVSTWMRLEDNLINYQT 372
           L+++ T +W+  +  +V+++W+  +  + Y  ++  WMRL +  +NY T
Sbjct: 88  LEILKTGVWTQDEWCVVMERWIEKS-TEEYLMFLPVWMRLRNIPVNYYT 135


>At2g05290.1 68415.m00557 expressed protein similar to zinc finger
           protein [Arabidopsis thaliana] GI:976277
          Length = 383

 Score = 30.7 bits (66), Expect = 0.77
 Identities = 13/54 (24%), Positives = 31/54 (57%)
 Frame = +1

Query: 229 QVILTEMWSHMQDGLVLQQWLYSA*RQSYFPWVSTWMRLEDNLINYQTVIKLES 390
           +V+ T +W+    G+V+++W+      +Y  ++  W+RL +  +N+ T   ++S
Sbjct: 91  EVLKTGVWTQDDWGVVMERWVEDL-PPNYLMFLLIWLRLRNIPVNHYTQATIKS 143


>At2g39710.1 68415.m04872 aspartyl protease family protein contains 
           profile Pfam PF00026: Eukaryotic aspartyl protease;
           contains Prosite PS00141: Eukaryotic and viral aspartyl
           proteases active site.;
          Length = 442

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 420 SKGREQIICRRFQLDDCLVIDKVVLQSHPRGNPW-EI*LPLSRI 292
           S+G+E++ C  F   D L I+  V+  H + N W E  L  SR+
Sbjct: 380 SEGKEEVYCFTFGNSDLLGIEAFVIGHHHQQNVWMEFDLAKSRV 423


>At3g06550.1 68416.m00761 O-acetyltransferase-related similar to
           O-acetyltransferase (GI:17063556) [Cryptococcus
           neoformans var. neoformans]; contains 7 transmembrane
           domains
          Length = 419

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +1

Query: 229 QVILTEMWSHMQDGLVLQQWLYSA*RQSYFPWVSTWM-RLEDNLINYQTVIK 381
           Q+ L   W H + GL    W+       Y P V +WM +LE+  + ++  IK
Sbjct: 330 QLPLLHEW-HFRSGLDRYIWIIGMLYAYYHPTVESWMDKLEEAEMKFRVAIK 380


>At3g12350.1 68416.m01540 F-box family protein  ; similar to SKP1
           interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
          Length = 422

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +1

Query: 151 NLNGFWHLFAFSLAAYASPPLLYY 222
           NL GFW L   +  A +SPPL+++
Sbjct: 85  NLIGFWRLCGRANPAASSPPLVFF 108


>At2g37730.1 68415.m04627 fringe-related protein similarity to
           predicted proteins + similar to hypothetical protein
           GB:AAC23643 [Arabidopsis thaliana] + weak similarity to
           Fringe [Schistocerca gregaria](GI:6573138);Fringe
           encodes an extracellular protein that regulates Notch
           signalling.
          Length = 532

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
 Frame = +3

Query: 258 YARWVGFAAMVVFCLAAVIFPM----GFHVDEIGGQPYQLPNSHQV 383
           YA   G    +  CL+ +  P+    GFH  +I G PY L  +H V
Sbjct: 266 YASLYGSDQKIEACLSEIGVPLTKELGFHQVDIRGNPYGLLAAHPV 311


>At1g05570.1 68414.m00575 callose synthase 1 (CALS1) / 1,3-beta-glucan
            synthase 1 nearly identical to callose synthase 1
            catalytic subunit [Arabidopsis thaliana] GI:13649388
          Length = 1922

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +3

Query: 357  YQL-PNSHQVGISYILFVLSLWITVISELFA 446
            YQ+   S++  ++YIL  +S+W  V++ LFA
Sbjct: 1641 YQIFGQSYRGVVTYILITVSIWFMVVTWLFA 1671


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,032,650
Number of Sequences: 28952
Number of extensions: 274097
Number of successful extensions: 549
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 541
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 549
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)