Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f05
         (625 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8WSJ1 Cluster: Vitelline membrane associated protein P...   316   2e-85
UniRef50_Q8A3I6 Cluster: Putative outer membrane protein, probab...    36   1.0  
UniRef50_A6Q2C2 Cluster: DNA mismatch repair ATPase MutS; n=1; N...    35   1.4  
UniRef50_UPI00006CB3FF Cluster: hypothetical protein TTHERM_0047...    34   2.4  
UniRef50_A4SWL3 Cluster: DEAD/DEAH box helicase domain protein; ...    33   5.6  
UniRef50_Q4U8F1 Cluster: Putative uncharacterized protein; n=2; ...    33   5.6  
UniRef50_Q9PBC4 Cluster: ATP phosphoribosyltransferase; n=12; Xa...    33   5.6  
UniRef50_A7NX55 Cluster: Chromosome chr5 scaffold_2, whole genom...    33   7.3  
UniRef50_Q2YBL1 Cluster: Apolipoprotein N-acyltransferase; n=1; ...    32   9.7  
UniRef50_O81347 Cluster: Plant adhesion molecule 1; n=11; Magnol...    32   9.7  
UniRef50_O59718 Cluster: NLI interacting factor family; n=1; Sch...    32   9.7  
UniRef50_A7EV86 Cluster: Predicted protein; n=1; Sclerotinia scl...    32   9.7  

>UniRef50_Q8WSJ1 Cluster: Vitelline membrane associated protein P30;
           n=1; Bombyx mori|Rep: Vitelline membrane associated
           protein P30 - Bombyx mori (Silk moth)
          Length = 272

 Score =  316 bits (777), Expect = 2e-85
 Identities = 153/183 (83%), Positives = 154/183 (84%)
 Frame = +2

Query: 77  IDCVTGDPFQVNMGYQPIQGRTSNTFPVMAQFPTYRNFIPKETNQPLLHIANGPNTNSNA 256
           IDCVTGDPFQVNMGYQPIQGRTSNTFPVMAQFPTYRNFIPKETNQPL+HIANGPNTNSNA
Sbjct: 17  IDCVTGDPFQVNMGYQPIQGRTSNTFPVMAQFPTYRNFIPKETNQPLVHIANGPNTNSNA 76

Query: 257 MPENRQTSGNEXXXXXXXXXXXXXXXXXREQFRAAAGRDEQTXXXXXXXXXXXXSGHNYG 436
           MPENRQTSGNE                 REQFRAAAGRDEQT            SGHNYG
Sbjct: 77  MPENRQTSGNELTFDDFLDTWDDHFLDDREQFRAAAGRDEQTYPYPNPPAYGYPSGHNYG 136

Query: 437 PSKPTAYTHPANSATPKISLLKPDLTELVRPVTSKVISKVNGLLGFILALLSGTVPQGLQ 616
           PSKPTAYTHPANSATPKISLLKPDLTELVRPVTSKVISKVNGLLGFILALLSGTVPQGLQ
Sbjct: 137 PSKPTAYTHPANSATPKISLLKPDLTELVRPVTSKVISKVNGLLGFILALLSGTVPQGLQ 196

Query: 617 LQG 625
           LQG
Sbjct: 197 LQG 199


>UniRef50_Q8A3I6 Cluster: Putative outer membrane protein, probably
           involved in nutrient binding; n=3; Bacteroides
           thetaiotaomicron|Rep: Putative outer membrane protein,
           probably involved in nutrient binding - Bacteroides
           thetaiotaomicron
          Length = 1052

 Score = 35.5 bits (78), Expect = 1.0
 Identities = 22/73 (30%), Positives = 34/73 (46%)
 Frame = +1

Query: 70  KTDRLRDRRSISSEYGLSADTGANFEHFPGHGSVSDLQEFHTKGDKSTFVTYRKWTQHKF 249
           +TD L+ R SI S  G  AD  AN     GHG   DL ++    +K+ F+  R    +  
Sbjct: 747 RTDILQKRASIPSVMGYQADVYANIGETKGHGVDLDL-KYQKNLNKNAFLIVRGNLTYAH 805

Query: 250 KRYAREQANKWQR 288
             Y + + N + +
Sbjct: 806 SEYLKYEDNTYDK 818


>UniRef50_A6Q2C2 Cluster: DNA mismatch repair ATPase MutS; n=1;
           Nitratiruptor sp. SB155-2|Rep: DNA mismatch repair
           ATPase MutS - Nitratiruptor sp. (strain SB155-2)
          Length = 971

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 19/52 (36%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
 Frame = +3

Query: 315 HGTITF--WMIVNSFARRLVEMNKRIHIQTHLHTATRLDIIMDLRSRQPIHI 464
           HGT T+    IV +  +RL EM  +    THLH  T ++ IM L+    +H+
Sbjct: 771 HGTETYSALSIVGAAIQRLYEMGSKFIFATHLHQLTTIEPIMSLKRLVFLHL 822


>UniRef50_UPI00006CB3FF Cluster: hypothetical protein
           TTHERM_00474840; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00474840 - Tetrahymena
           thermophila SB210
          Length = 289

 Score = 34.3 bits (75), Expect = 2.4
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +2

Query: 203 TNQPLLHIANGPNTNSNAMPENRQTSGN 286
           TN+P++  +N  N NSNA+  N Q SGN
Sbjct: 88  TNKPIIANSNNSNNNSNAVSVNNQNSGN 115


>UniRef50_A4SWL3 Cluster: DEAD/DEAH box helicase domain protein;
           n=3; Proteobacteria|Rep: DEAD/DEAH box helicase domain
           protein - Polynucleobacter sp. QLW-P1DMWA-1
          Length = 500

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 17/49 (34%), Positives = 28/49 (57%)
 Frame = +2

Query: 476 ATPKISLLKPDLTELVRPVTSKVISKVNGLLGFILALLSGTVPQGLQLQ 622
           A PK+ +L P   EL + V +  ++ V G+ G  +A + G +P G Q+Q
Sbjct: 95  AQPKVLVLCPT-RELAQQVAADAVNLVRGMKGIRIATVMGGMPYGKQIQ 142


>UniRef50_Q4U8F1 Cluster: Putative uncharacterized protein; n=2;
           Theileria|Rep: Putative uncharacterized protein -
           Theileria annulata
          Length = 1139

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +1

Query: 439 FEADSLYTSSEFSHTENLFIEARPYRTSKTCYLKSDKQSERLA 567
           F  D L   ++F  ++  F+E RP + ++TCY++    SE L+
Sbjct: 822 FSPDQLPQLTKFFSSQPGFVELRPTKNNRTCYVEFSTNSEALS 864


>UniRef50_Q9PBC4 Cluster: ATP phosphoribosyltransferase; n=12;
           Xanthomonadaceae|Rep: ATP phosphoribosyltransferase -
           Xylella fastidiosa
          Length = 304

 Score = 33.1 bits (72), Expect = 5.6
 Identities = 23/66 (34%), Positives = 35/66 (53%)
 Frame = +3

Query: 249 QTLCQRTGKQVATS*PLTTFWIHGTITFWMIVNSFARRLVEMNKRIHIQTHLHTATRLDI 428
           Q + Q TGK++ATS P         +T W+  +  A ++VE++  + I   L TA   D+
Sbjct: 123 QDISQLTGKRIATSYP-------AILTDWLQTHHIAAQIVELSGSVEIAPRLGTA---DL 172

Query: 429 IMDLRS 446
           I DL S
Sbjct: 173 ICDLVS 178


>UniRef50_A7NX55 Cluster: Chromosome chr5 scaffold_2, whole genome
           shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
           chr5 scaffold_2, whole genome shotgun sequence - Vitis
           vinifera (Grape)
          Length = 139

 Score = 32.7 bits (71), Expect = 7.3
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
 Frame = +1

Query: 454 LYTSSEFSHTEN-LFIEARPYRTSKTCYLKSDKQSERLAWFYIGIIIRNRSTR 609
           L T+  F   E+ +    R  R S  C+  +     ++ W Y GI+IR  ST+
Sbjct: 51  LITNDRFKSVEHRVLANRRGPRVSVACFFSTSSAILKIIWTYQGIVIRRESTK 103


>UniRef50_Q2YBL1 Cluster: Apolipoprotein N-acyltransferase; n=1;
           Nitrosospira multiformis ATCC 25196|Rep: Apolipoprotein
           N-acyltransferase - Nitrosospira multiformis (strain
           ATCC 25196 / NCIMB 11849)
          Length = 500

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 18/52 (34%), Positives = 25/52 (48%)
 Frame = +3

Query: 114 WVISRYRGELRTLSRSWLSFRPTGISYQRRQINLCYISQMDPTQIQTLCQRT 269
           W+I+  +  L   SR  L  +P  I+ QR  +N+CY        IQ L Q T
Sbjct: 340 WIINVLKIPLSDFSRGALGQQPMNIAGQRVAVNICYEDVFGEEIIQQLPQAT 391


>UniRef50_O81347 Cluster: Plant adhesion molecule 1; n=11;
           Magnoliophyta|Rep: Plant adhesion molecule 1 -
           Arabidopsis thaliana (Mouse-ear cress)
          Length = 356

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
 Frame = +3

Query: 333 WMIVNSFARRLVEMNKRIHIQTHLH--TATRLDIIMDLRSRQPIHI---QRIQPHRKSLY 497
           W +++  +R L+ MN  +++Q  ++  +A+ LDII D+    P H+   +R  P ++SLY
Sbjct: 95  WQLISG-SRDLLLMNPGVYVQLVIYETSASELDIIRDISRTFPSHVFFQKRHGPGQRSLY 153


>UniRef50_O59718 Cluster: NLI interacting factor family; n=1;
           Schizosaccharomyces pombe|Rep: NLI interacting factor
           family - Schizosaccharomyces pombe (Fission yeast)
          Length = 476

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -3

Query: 365 QPPRETVHDHPESDRPMYPKSRQRSARCHLFACSLA*RLNLCWVHLRYVTKVDLSPLV*N 186
           QP  + + D+ E D+ ++ K   R   C L   S    +++C +HL  +  +D SP   N
Sbjct: 371 QPYADPIIDYLERDKKIFAKRYYRQ-HCALVDSSFVKDISICNIHLSRIMIIDNSPASYN 429

Query: 185 SCRSETEP*PG 153
           + +    P  G
Sbjct: 430 AHKENAIPIEG 440


>UniRef50_A7EV86 Cluster: Predicted protein; n=1; Sclerotinia
           sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
           sclerotiorum 1980
          Length = 579

 Score = 32.3 bits (70), Expect = 9.7
 Identities = 13/25 (52%), Positives = 18/25 (72%)
 Frame = -2

Query: 603 GTVPDNNANIKPSKPFTLLITFEVT 529
           G+ PDN+ NI PS  FTLL+ + +T
Sbjct: 433 GSQPDNSYNISPSMDFTLLMLYVIT 457


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 647,021,735
Number of Sequences: 1657284
Number of extensions: 13032250
Number of successful extensions: 40158
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 38264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40105
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 45636850930
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)