Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f05
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces...    32   0.059
SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr 1|||...    28   0.95 
SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein Nop10|Sc...    27   1.7  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    27   1.7  
SPAC23C4.16c |atg15||triacylglycerol lipase Atg15 |Schizosacchar...    27   1.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   2.2  
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c...    27   2.2  
SPBC530.09c |||cation dependent mannose-6-phosphate cargo recept...    27   2.9  
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom...    27   2.9  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    27   2.9  
SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30 family|Sc...    26   5.1  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    26   5.1  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   5.1  
SPAC4H3.11c |ppc89|mug127|spindle pole body protein Ppc89|Schizo...    26   5.1  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   6.7  
SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces ...    25   6.7  

>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 476

 Score = 32.3 bits (70), Expect = 0.059
 Identities = 19/71 (26%), Positives = 33/71 (46%)
 Frame = -3

Query: 365 QPPRETVHDHPESDRPMYPKSRQRSARCHLFACSLA*RLNLCWVHLRYVTKVDLSPLV*N 186
           QP  + + D+ E D+ ++ K   R   C L   S    +++C +HL  +  +D SP   N
Sbjct: 371 QPYADPIIDYLERDKKIFAKRYYRQ-HCALVDSSFVKDISICNIHLSRIMIIDNSPASYN 429

Query: 185 SCRSETEP*PG 153
           + +    P  G
Sbjct: 430 AHKENAIPIEG 440


>SPAC3C7.10 |pex13||peroxin-13|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 288

 Score = 28.3 bits (60), Expect = 0.95
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +2

Query: 95  DPFQVNMGYQPIQGRTSNTFPVMAQFPTYRNFIPKETNQPLLHIANGP 238
           +P   NMG+ P  G   N+F      P++  F+P ETN P     NGP
Sbjct: 45  NPNYYNMGFNPYSG--FNSF-----IPSFNPFVPLETNLP----GNGP 81


>SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein
           Nop10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 64

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -3

Query: 152 KCSKFAPVSADNPYSLEMDRLSRNLSVLLTHTTAQPY 42
           K S  A  S D+ YS +   L +   VLLT   A+PY
Sbjct: 28  KSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLPAKPY 64


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
 Frame = +2

Query: 146 NTFPVMAQFPTYRNFIPKETNQPLL--HIANGPNTNSNAMPENRQTSGN 286
           NT P    FP   N  P  +N P L  H ++G ++N N     RQ+  +
Sbjct: 129 NTTP---HFPQVSNHAPNNSNSPSLTWHTSSGDDSNQNPFFVRRQSQSS 174


>SPAC23C4.16c |atg15||triacylglycerol lipase Atg15
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 424

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 12/46 (26%), Positives = 24/46 (52%)
 Frame = -3

Query: 473 NSLDVYRLSASKVHNYVQTGSRMQVGLDMDTFVHLDQPPRETVHDH 336
           +S+  YRL  +K   Y ++ S++ + +     VHL    R+ + D+
Sbjct: 55  DSISYYRLDVAKKSVYAESESKLPLKMKKGYSVHLKDQSRDALTDY 100


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 214  FVTYRKWTQHKFKRYAREQANKW 282
            FV YR++ +  F+  +R QAN W
Sbjct: 1378 FVDYREFMRWLFRENSRNQANSW 1400


>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 661

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 333 WMIVNSFARRLVEMNKRIHIQTHLHT 410
           W++ NSF R    +   IH+ THLHT
Sbjct: 357 WLLDNSFFRNRHRL-LAIHLATHLHT 381


>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1687

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 382 RLFISTSRRAKLFTIIQKVIVPCI 311
           R+  + S R  LFTI++  I+PC+
Sbjct: 348 RILYALSDRRPLFTIVESQILPCV 371


>SPBC530.09c |||cation dependent mannose-6-phosphate cargo receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 296

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 82  LRDRRSISSEYGLSA-DTGANFEHFPGHGSVSDLQEFHTKGDKST 213
           +RD  S   +Y ++  D G NF     H  VS+L  +  +GD S+
Sbjct: 61  IRDNTSEKGDYSVNGYDFGTNFSINLCHPVVSNLTNYTVEGDVSS 105


>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
           Pof7|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 361

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -1

Query: 196 WYEIPVGRKLSHDRESVRSSPLYRL-ITHIHLKWIACHAIYQFY*HTQQHNLTEQFHFSL 20
           W   P G  L     S   + + +L +  I LKWI+ ++I+ +   T +  LT    +  
Sbjct: 286 WSMTPSGEMLIVYPASQTYTYVQKLQVRGIRLKWISFYSIHNYTSFTNEMPLTHNRDYVF 345

Query: 19  YRNYDY 2
            R Y Y
Sbjct: 346 SRVYSY 351


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 419 SGHNYGPSKPTAYTHPANSATPKISLLKPDLTELVRP 529
           + HN  P  P A+  P N+A+P  +L    L +L+RP
Sbjct: 177 NSHNAVPFTPHAFVPPVNNASPLPAL--NTLPQLLRP 211


>SPCC306.07c |||U3 snoRNP-associated protein Cic1/Utp30
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 284

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 361 GWSR*TNVSISKPTCIRLPVWT 426
           GWS   NV+I       LP+WT
Sbjct: 222 GWSAIDNVAIKTADSASLPIWT 243


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
           Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +1

Query: 139 NFEHFPGHGSVSDLQEFHTKGDKSTFVTYRKWTQHKFK 252
           +F       SV D QEF ++ DK    +Y  W+   F+
Sbjct: 167 HFRPLRQRSSVDDHQEFESEDDKYRRNSYSSWSGSNFE 204


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -1

Query: 97  IACHAIYQFY*HTQQHNLTEQFHFSLYRNYDY 2
           ++C  I++FY HT + N      FSL++N  Y
Sbjct: 80  LSCAIIFRFYLHTNREN------FSLFKNDSY 105


>SPAC4H3.11c |ppc89|mug127|spindle pole body protein
           Ppc89|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +2

Query: 86  VTGDPFQVNMGYQPIQGRTSNTFPVMAQFPTYRN 187
           + GD FQ N+ +QP  G+  +  P     P  ++
Sbjct: 30  LNGDSFQDNLNFQPRSGKREDFEPFFQDTPNTKS 63


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +2

Query: 470 NSATPKISLLKPDLTELVRPVTSKVISKVNGLLGFILALLSGT 598
           N A  K+S+L   L  L RP  +  I   N    F     SGT
Sbjct: 184 NDAGEKLSILSSTLARLDRPAPNYGIDNYNDFNTFYYQAASGT 226


>SPAC3H1.11 |hsr1||transcription factor Hsr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 582

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/35 (25%), Positives = 20/35 (57%)
 Frame = +2

Query: 164 AQFPTYRNFIPKETNQPLLHIANGPNTNSNAMPEN 268
           A  P+Y   + +    P L +++GP + ++++P N
Sbjct: 282 ALVPSYTTLVSQLPPSPCLTVSSGPLSTASSIPSN 316


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,705,242
Number of Sequences: 5004
Number of extensions: 56485
Number of successful extensions: 180
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)