Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f05
         (625 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0867 - 20414999-20415160,20415255-20415384,20415515-204157...    31   0.56 
05_07_0228 - 28526885-28527046,28527151-28527241,28528315-285284...    28   5.2  
03_03_0254 + 15884149-15884295,15884765-15884803,15884958-158851...    28   5.2  
12_02_0326 + 17555731-17556387                                         28   6.9  
08_02_0274 - 15192670-15192983,15193110-15193200,15193295-151936...    27   9.2  

>04_03_0867 -
           20414999-20415160,20415255-20415384,20415515-20415702,
           20415967-20416001,20416363-20416579,20416737-20416820,
           20417609-20417875,20417954-20418061,20418163-20418249,
           20418629-20419399
          Length = 682

 Score = 31.5 bits (68), Expect = 0.56
 Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
 Frame = +3

Query: 237 PTQIQTLCQRTGKQVATS*PLTTFWIHGTIT-FWMIVNSFARRLVEMNKRIHIQTHLHTA 413
           PT +Q +    G Q+ T  PL +      I   W+++ S  RRL +++K  HI   + T 
Sbjct: 261 PTSLQLIAM--GHQMVTINPLLSVVAATVIPCMWLVIASLGRRLRQISKEAHISLAMLTV 318

Query: 414 TRLDII 431
              D++
Sbjct: 319 YLNDVL 324


>05_07_0228 -
           28526885-28527046,28527151-28527241,28528315-28528455,
           28528560-28528625,28529180-28529317,28529759-28529860,
           28530156-28530236,28530314-28530383,28530598-28530674,
           28531035-28531483
          Length = 458

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = +2

Query: 434 GPSKPTAYTHPANSATPKISLLKPDLTELVRPVTSKVISKVNGLLG 571
           G   P+  THP N+ATP  S     +  +VRP      S V+G  G
Sbjct: 37  GLHAPSISTHPTNAATPNPSPPGASIVVVVRPAMQPA-SPVSGDAG 81


>03_03_0254 +
           15884149-15884295,15884765-15884803,15884958-15885136,
           15887175-15887310,15887769-15887865,15888448-15888534,
           15888621-15888721,15888905-15888939,15889520-15889577,
           15889650-15889724,15890048-15890135,15890155-15890308,
           15890395-15890638
          Length = 479

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +2

Query: 128 IQGRTSNTFPVMAQFPTYRNFIPKETNQPLLHI 226
           I  R SN    M Q  TY+N++ KET+  LLH+
Sbjct: 260 INQRVSNA--AMDQGITYQNYLSKETSDLLLHL 290


>12_02_0326 + 17555731-17556387
          Length = 218

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 357 RRLVEMNKRIHIQTHLHTATRLDIIMDLRSRQPIHIQRIQP 479
           R  V ++  I + +HL    R+ I    RSR+P+H+Q   P
Sbjct: 39  RPSVRLSGSIPLPSHLPHPRRIPITPASRSRKPLHLQPHHP 79


>08_02_0274 -
           15192670-15192983,15193110-15193200,15193295-15193603,
           15193859-15193944,15196034-15196088,15196689-15196757,
           15197027-15197074,15198090-15198203,15198464-15198526,
           15199236-15199427,15199519-15199643,15199723-15199779,
           15200209-15200332,15200478-15200543,15200656-15200738,
           15200916-15201036,15201663-15201773,15201841-15201936,
           15202032-15202107,15202878-15203016,15203283-15203346,
           15203454-15203527,15203845-15203923,15204473-15204547
          Length = 876

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 64  VSKTDRLRDRRSISSEYGLSADTGANFEHFPGHGSVSD 177
           ++K  RL+ +R +     + AD G ++ H P HG + D
Sbjct: 299 LAKEARLKIKR-VDPTLDMEADAGDDYIHLPDHGIIRD 335


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,091,312
Number of Sequences: 37544
Number of extensions: 349286
Number of successful extensions: 940
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 921
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 940
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)