Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f05
         (625 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11614| Best HMM Match : MbeB_N (HMM E-Value=8)                      29   3.1  
SB_9324| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.4  
SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_47539| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_11614| Best HMM Match : MbeB_N (HMM E-Value=8)
          Length = 143

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +1

Query: 448 DSLYTSSEFSHTENLFIEARPYRTSKTCYLKSDKQSERLAWFYIGII 588
           +S+ T+ E     NL   +   R  +TC   +  QSER+ +FYI II
Sbjct: 97  NSISTARELE--SNLVPSSSKRRLGRTCLRYAIVQSERIRFFYISII 141


>SB_9324| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 108

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +2

Query: 533 TSKVISKVNGLLGFILALLSGTVPQGLQ 616
           T  VISK N +LGF+L   S  +P  LQ
Sbjct: 60  THNVISKANKMLGFLLRHCSNGLPLDLQ 87


>SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1331

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = -3

Query: 371 LDQPPRETVHDHPESDRPMYPKSRQRS 291
           +DQP     H+HP  D+P+  KS   S
Sbjct: 580 IDQPINVNSHNHPSVDQPINAKSHYHS 606


>SB_47539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 515

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/47 (23%), Positives = 25/47 (53%)
 Frame = +3

Query: 231 MDPTQIQTLCQRTGKQVATS*PLTTFWIHGTITFWMIVNSFARRLVE 371
           MD  + Q  C R GK++A    +   ++   +TF+ +++S  +  ++
Sbjct: 1   MDKQEQQVSCIRGGKKIAVFFTVGVLFVLAAVTFYPMIDSVIKNKID 47


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,284,704
Number of Sequences: 59808
Number of extensions: 437267
Number of successful extensions: 1508
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1496
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)