BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f05 (625 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_11614| Best HMM Match : MbeB_N (HMM E-Value=8) 29 3.1 SB_9324| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4 SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.1 SB_47539| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4 >SB_11614| Best HMM Match : MbeB_N (HMM E-Value=8) Length = 143 Score = 29.1 bits (62), Expect = 3.1 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +1 Query: 448 DSLYTSSEFSHTENLFIEARPYRTSKTCYLKSDKQSERLAWFYIGII 588 +S+ T+ E NL + R +TC + QSER+ +FYI II Sbjct: 97 NSISTARELE--SNLVPSSSKRRLGRTCLRYAIVQSERIRFFYISII 141 >SB_9324| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 108 Score = 28.3 bits (60), Expect = 5.4 Identities = 14/28 (50%), Positives = 17/28 (60%) Frame = +2 Query: 533 TSKVISKVNGLLGFILALLSGTVPQGLQ 616 T VISK N +LGF+L S +P LQ Sbjct: 60 THNVISKANKMLGFLLRHCSNGLPLDLQ 87 >SB_49133| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1331 Score = 27.9 bits (59), Expect = 7.1 Identities = 11/27 (40%), Positives = 15/27 (55%) Frame = -3 Query: 371 LDQPPRETVHDHPESDRPMYPKSRQRS 291 +DQP H+HP D+P+ KS S Sbjct: 580 IDQPINVNSHNHPSVDQPINAKSHYHS 606 >SB_47539| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 515 Score = 27.5 bits (58), Expect = 9.4 Identities = 11/47 (23%), Positives = 25/47 (53%) Frame = +3 Query: 231 MDPTQIQTLCQRTGKQVATS*PLTTFWIHGTITFWMIVNSFARRLVE 371 MD + Q C R GK++A + ++ +TF+ +++S + ++ Sbjct: 1 MDKQEQQVSCIRGGKKIAVFFTVGVLFVLAAVTFYPMIDSVIKNKID 47 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 20,284,704 Number of Sequences: 59808 Number of extensions: 437267 Number of successful extensions: 1508 Number of sequences better than 10.0: 4 Number of HSP's better than 10.0 without gapping: 1289 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1496 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1548368000 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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