Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f05
         (625 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    26   0.34 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.60 
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    24   1.0  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    24   1.4  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    24   1.4  
DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   5.6  
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   7.4  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   7.4  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.8 bits (54), Expect = 0.34
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = +2

Query: 137 RTSNTFPVMAQFPTYRNFIPKETNQPLLHIANGPNTNS 250
           RT     +   + +Y N+I KET    L I+  P +N+
Sbjct: 443 RTIENEQLNRMYKSYPNYIDKETKDMNLEISTRPKSNT 480


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.0 bits (52), Expect = 0.60
 Identities = 13/22 (59%), Positives = 14/22 (63%)
 Frame = -2

Query: 618  NWRPCGTVPDNNANIKPSKPFT 553
            N RP GT  DN   +KP KPFT
Sbjct: 1114 NIRP-GTA-DNKPQLKPQKPFT 1133


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 413 SRMQVGLDMDTFVHLDQPPRETV--HDHPESDRPMYPKSRQRSARCHLFA 270
           S+  V    D   H  + P + V  +D+   D P Y  SR++ ++ HL +
Sbjct: 303 SQNSVSTGSDKENHKTEEPNDEVATYDNTPRDFPYYMYSREQYSQSHLIS 352


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -1

Query: 436 SIIMSRRVAVCRWVWIWIRLFISTSRRAKLFTIIQKVIVPCIQ 308
           ++I +  + VC  +W WIRL    +    L   ++  +V  +Q
Sbjct: 45  TLISNDILPVCNGLWRWIRLTYGQTNHISLTLDLEYELVENLQ 87


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -1

Query: 436 SIIMSRRVAVCRWVWIWIRLFISTSRRAKLFTIIQKVIVPCIQ 308
           ++I +  + VC  +W WIRL    +    L   ++  +V  +Q
Sbjct: 83  TLISNDILPVCNGLWRWIRLTYGQTNHISLTLDLEYELVENLQ 125


>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 7/18 (38%), Positives = 15/18 (83%)
 Frame = +2

Query: 542 VISKVNGLLGFILALLSG 595
           ++S++NG+LG ++A+  G
Sbjct: 285 ILSQINGILGSLVAITGG 302


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +2

Query: 521 VRPVTSKVISKVNGLLGFILALLSGTV 601
           + P+   ++  V G+LGF+ A+ +G V
Sbjct: 47  LNPMWHGILGFVIGMLGFVSAMGNGMV 73


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = -1

Query: 457 IGCRLRRSIIMSRRVAVCRWVWIWIR 380
           +G  L  + I S  + V  W+  WI+
Sbjct: 213 LGYHLFHTYIPSALIVVMSWIAFWIK 238


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +3

Query: 429 IMDLRSRQPIHIQR 470
           ++DLR  Q +H+QR
Sbjct: 233 LLDLRQLQELHLQR 246


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,320
Number of Sequences: 438
Number of extensions: 4188
Number of successful extensions: 13
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)