Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmov12f05
(625 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g15930.1 68418.m01863 plant adhesion molecule 1 (PAM1) identi... 32 0.27
At3g02460.2 68416.m00234 plant adhesion molecule, putative stron... 30 1.4
At3g02460.1 68416.m00233 plant adhesion molecule, putative stron... 30 1.4
At1g64860.1 68414.m07353 RNA polymerase sigma subunit SigA (sigA... 30 1.4
At4g01290.1 68417.m00170 expressed protein 28 4.4
At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end... 28 5.8
At4g36040.1 68417.m05130 DNAJ heat shock N-terminal domain-conta... 28 5.8
At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1) iden... 28 5.8
At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1) iden... 28 5.8
At4g02260.1 68417.m00307 RelA/SpoT protein, putative (RSH1) iden... 28 5.8
At5g24010.1 68418.m02821 protein kinase family protein contains ... 27 7.7
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot... 27 7.7
At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam... 27 7.7
>At5g15930.1 68418.m01863 plant adhesion molecule 1 (PAM1) identical
to plant adhesion molecule 1 [Arabidopsis thaliana]
GI:3511223; contains Pfam profile PF00566: TBC domain
Length = 356
Score = 32.3 bits (70), Expect = 0.27
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
Frame = +3
Query: 333 WMIVNSFARRLVEMNKRIHIQTHLH--TATRLDIIMDLRSRQPIHI---QRIQPHRKSLY 497
W +++ +R L+ MN +++Q ++ +A+ LDII D+ P H+ +R P ++SLY
Sbjct: 95 WQLISG-SRDLLLMNPGVYVQLVIYETSASELDIIRDISRTFPSHVFFQKRHGPGQRSLY 153
>At3g02460.2 68416.m00234 plant adhesion molecule, putative strong
similarity to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 333
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Frame = +3
Query: 333 WMIVNSFARRLVEMNKRIHIQTHLH--TATRLDIIMDLRSRQPIHI---QRIQPHRKSLY 497
W +++ +R L+ MN ++ Q ++ +A+ LDII D+ P H+ +R P ++SLY
Sbjct: 98 WQLISG-SRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQKRHGPGQRSLY 156
>At3g02460.1 68416.m00233 plant adhesion molecule, putative strong
similarity to plant adhesion molecule 1 [Arabidopsis
thaliana] GI:3511223; contains Pfam profile PF00566: TBC
domain
Length = 353
Score = 29.9 bits (64), Expect = 1.4
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
Frame = +3
Query: 333 WMIVNSFARRLVEMNKRIHIQTHLH--TATRLDIIMDLRSRQPIHI---QRIQPHRKSLY 497
W +++ +R L+ MN ++ Q ++ +A+ LDII D+ P H+ +R P ++SLY
Sbjct: 98 WQLISG-SRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQKRHGPGQRSLY 156
>At1g64860.1 68414.m07353 RNA polymerase sigma subunit SigA (sigA) /
sigma factor 1 (SIG1) identical to sigma factor SigA
[Arabidopsis thaliana] GI:5478439, sigma factor 1
[Arabidopsis thaliana] GI:2353171, plastid RNA
polymerase sigma-subunit [Arabidopsis thaliana]
GI:2398851; contains Pfam profiles PF04545: Sigma-70,
region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
region 2
Length = 502
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/43 (32%), Positives = 24/43 (55%)
Frame = +3
Query: 321 TITFWMIVNSFARRLVEMNKRIHIQTHLHTATRLDIIMDLRSR 449
T +W I +R LV+ ++ + + THLH RL +I + + R
Sbjct: 313 TYVYWWIRQGVSRALVDNSRTLRLPTHLH--ERLGLIRNAKLR 353
>At4g01290.1 68417.m00170 expressed protein
Length = 991
Score = 28.3 bits (60), Expect = 4.4
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Frame = +1
Query: 58 VCVSKTDRLRDRRSISSEYGLSADT---GANFEHFPGHGSVSDLQEFHTKGDKSTFVTYR 228
V VS TD +ISS G+S DT +FE + +++Q + K +K+T +
Sbjct: 370 VRVSSTDANERAVNISSLLGISTDTVNKDKSFEKLSSISTPTEIQGYPIKSEKATMTLGK 429
Query: 229 K 231
K
Sbjct: 430 K 430
>At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein
endo-1,4-beta-glucanase precursor - Fragariax ananassa,
PID:g3549291 A short intron was annotated between exons
4 and 5 to circumvent a frameshift. The frameshift may
be artificial due to a sequencing error, or
alternatively is genuine suggesting a truncated protein
or pseudogene.
Length = 495
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +2
Query: 119 YQPIQGRTSNTFPVMAQFPTYRNFIPKETNQPLLHIANGP 238
Y+P + NT + TY N++ K + QPL ++ P
Sbjct: 331 YKPGSSQLQNTVALSFLLLTYANYLSKSSQQPLQILSTTP 370
>At4g36040.1 68417.m05130 DNAJ heat shock N-terminal
domain-containing protein (J11) identical to dnaJ heat
shock protein J11 [Arabidopsis thaliana] GI:9843641;
contains Pfam profile PF00226 DnaJ domain
Length = 161
Score = 27.9 bits (59), Expect = 5.8
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 440 SKPTAYTHPANSATPKISLLKP 505
S PT++THP S++P +S + P
Sbjct: 4 SSPTSFTHPFLSSSPPLSPISP 25
>At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 816
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 148 HFPGHGSVSDLQEFHTKGDKSTFVTYRKWTQHKFKRYAREQANKWQR 288
H + V ++ ++ KS F +++W QH R AR + ++ R
Sbjct: 613 HVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLR 659
>At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 883
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 148 HFPGHGSVSDLQEFHTKGDKSTFVTYRKWTQHKFKRYAREQANKWQR 288
H + V ++ ++ KS F +++W QH R AR + ++ R
Sbjct: 613 HVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLR 659
>At4g02260.1 68417.m00307 RelA/SpoT protein, putative (RSH1)
identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
thaliana] GI:7141304; contains Pfam profiles PF02824:
TGS domain, PF01966: HD domain, PF04607: Region found in
RelA / SpoT proteins
Length = 884
Score = 27.9 bits (59), Expect = 5.8
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +1
Query: 148 HFPGHGSVSDLQEFHTKGDKSTFVTYRKWTQHKFKRYAREQANKWQR 288
H + V ++ ++ KS F +++W QH R AR + ++ R
Sbjct: 614 HVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLR 660
>At5g24010.1 68418.m02821 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 824
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 149 TFPVMAQFPTYRNFIPKETNQPLLHIANGPNTNSNAMPENRQTSGNE 289
TF V+A P Y +F+ + +L I+ GP+ SN N +G E
Sbjct: 343 TFHVLAS-PLYIDFVAESDRSGMLRISVGPSDLSNPARVNALLNGVE 388
>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
low similarity to kinase [Gallus gallus] GI:1370092;
contains Pfam profile PF00439: Bromodomain
Length = 678
Score = 27.5 bits (58), Expect = 7.7
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 188 FIPKETNQPLLHIANGPNTNSNAMPENRQTSGN 286
F+ K TNQPL N P N N P + GN
Sbjct: 97 FMRKYTNQPLSGDINNPLFNPNPNPNSISAYGN 129
>At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam
PF03467: Smg-4/UPF3 family; similar to hUPF3B
(GI:12232324) [Homo sapiens]
Length = 482
Score = 27.5 bits (58), Expect = 7.7
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +3
Query: 159 SWLSFRPTGISYQRRQINLCYISQMDPTQI 248
+W+SFRP SY+ ++ + Y+S P +
Sbjct: 37 NWVSFRPGKSSYKNQKYSRAYVSFKAPEDV 66
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,985,738
Number of Sequences: 28952
Number of extensions: 290293
Number of successful extensions: 797
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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