BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= bmov12f05 (625 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At5g15930.1 68418.m01863 plant adhesion molecule 1 (PAM1) identi... 32 0.27 At3g02460.2 68416.m00234 plant adhesion molecule, putative stron... 30 1.4 At3g02460.1 68416.m00233 plant adhesion molecule, putative stron... 30 1.4 At1g64860.1 68414.m07353 RNA polymerase sigma subunit SigA (sigA... 30 1.4 At4g01290.1 68417.m00170 expressed protein 28 4.4 At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end... 28 5.8 At4g36040.1 68417.m05130 DNAJ heat shock N-terminal domain-conta... 28 5.8 At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1) iden... 28 5.8 At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1) iden... 28 5.8 At4g02260.1 68417.m00307 RelA/SpoT protein, putative (RSH1) iden... 28 5.8 At5g24010.1 68418.m02821 protein kinase family protein contains ... 27 7.7 At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot... 27 7.7 At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam... 27 7.7 >At5g15930.1 68418.m01863 plant adhesion molecule 1 (PAM1) identical to plant adhesion molecule 1 [Arabidopsis thaliana] GI:3511223; contains Pfam profile PF00566: TBC domain Length = 356 Score = 32.3 bits (70), Expect = 0.27 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%) Frame = +3 Query: 333 WMIVNSFARRLVEMNKRIHIQTHLH--TATRLDIIMDLRSRQPIHI---QRIQPHRKSLY 497 W +++ +R L+ MN +++Q ++ +A+ LDII D+ P H+ +R P ++SLY Sbjct: 95 WQLISG-SRDLLLMNPGVYVQLVIYETSASELDIIRDISRTFPSHVFFQKRHGPGQRSLY 153 >At3g02460.2 68416.m00234 plant adhesion molecule, putative strong similarity to plant adhesion molecule 1 [Arabidopsis thaliana] GI:3511223; contains Pfam profile PF00566: TBC domain Length = 333 Score = 29.9 bits (64), Expect = 1.4 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 5/60 (8%) Frame = +3 Query: 333 WMIVNSFARRLVEMNKRIHIQTHLH--TATRLDIIMDLRSRQPIHI---QRIQPHRKSLY 497 W +++ +R L+ MN ++ Q ++ +A+ LDII D+ P H+ +R P ++SLY Sbjct: 98 WQLISG-SRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQKRHGPGQRSLY 156 >At3g02460.1 68416.m00233 plant adhesion molecule, putative strong similarity to plant adhesion molecule 1 [Arabidopsis thaliana] GI:3511223; contains Pfam profile PF00566: TBC domain Length = 353 Score = 29.9 bits (64), Expect = 1.4 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 5/60 (8%) Frame = +3 Query: 333 WMIVNSFARRLVEMNKRIHIQTHLH--TATRLDIIMDLRSRQPIHI---QRIQPHRKSLY 497 W +++ +R L+ MN ++ Q ++ +A+ LDII D+ P H+ +R P ++SLY Sbjct: 98 WQLISG-SRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQKRHGPGQRSLY 156 >At1g64860.1 68414.m07353 RNA polymerase sigma subunit SigA (sigA) / sigma factor 1 (SIG1) identical to sigma factor SigA [Arabidopsis thaliana] GI:5478439, sigma factor 1 [Arabidopsis thaliana] GI:2353171, plastid RNA polymerase sigma-subunit [Arabidopsis thaliana] GI:2398851; contains Pfam profiles PF04545: Sigma-70, region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70 region 2 Length = 502 Score = 29.9 bits (64), Expect = 1.4 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +3 Query: 321 TITFWMIVNSFARRLVEMNKRIHIQTHLHTATRLDIIMDLRSR 449 T +W I +R LV+ ++ + + THLH RL +I + + R Sbjct: 313 TYVYWWIRQGVSRALVDNSRTLRLPTHLH--ERLGLIRNAKLR 353 >At4g01290.1 68417.m00170 expressed protein Length = 991 Score = 28.3 bits (60), Expect = 4.4 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%) Frame = +1 Query: 58 VCVSKTDRLRDRRSISSEYGLSADT---GANFEHFPGHGSVSDLQEFHTKGDKSTFVTYR 228 V VS TD +ISS G+S DT +FE + +++Q + K +K+T + Sbjct: 370 VRVSSTDANERAVNISSLLGISTDTVNKDKSFEKLSSISTPTEIQGYPIKSEKATMTLGK 429 Query: 229 K 231 K Sbjct: 430 K 430 >At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein endo-1,4-beta-glucanase precursor - Fragariax ananassa, PID:g3549291 A short intron was annotated between exons 4 and 5 to circumvent a frameshift. The frameshift may be artificial due to a sequencing error, or alternatively is genuine suggesting a truncated protein or pseudogene. Length = 495 Score = 27.9 bits (59), Expect = 5.8 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = +2 Query: 119 YQPIQGRTSNTFPVMAQFPTYRNFIPKETNQPLLHIANGP 238 Y+P + NT + TY N++ K + QPL ++ P Sbjct: 331 YKPGSSQLQNTVALSFLLLTYANYLSKSSQQPLQILSTTP 370 >At4g36040.1 68417.m05130 DNAJ heat shock N-terminal domain-containing protein (J11) identical to dnaJ heat shock protein J11 [Arabidopsis thaliana] GI:9843641; contains Pfam profile PF00226 DnaJ domain Length = 161 Score = 27.9 bits (59), Expect = 5.8 Identities = 10/22 (45%), Positives = 16/22 (72%) Frame = +2 Query: 440 SKPTAYTHPANSATPKISLLKP 505 S PT++THP S++P +S + P Sbjct: 4 SSPTSFTHPFLSSSPPLSPISP 25 >At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1) identical to RSH1 (RelA/SpoT homolog) [Arabidopsis thaliana] GI:7141304; contains Pfam profiles PF02824: TGS domain, PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins Length = 816 Score = 27.9 bits (59), Expect = 5.8 Identities = 12/47 (25%), Positives = 23/47 (48%) Frame = +1 Query: 148 HFPGHGSVSDLQEFHTKGDKSTFVTYRKWTQHKFKRYAREQANKWQR 288 H + V ++ ++ KS F +++W QH R AR + ++ R Sbjct: 613 HVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLR 659 >At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1) identical to RSH1 (RelA/SpoT homolog) [Arabidopsis thaliana] GI:7141304; contains Pfam profiles PF02824: TGS domain, PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins Length = 883 Score = 27.9 bits (59), Expect = 5.8 Identities = 12/47 (25%), Positives = 23/47 (48%) Frame = +1 Query: 148 HFPGHGSVSDLQEFHTKGDKSTFVTYRKWTQHKFKRYAREQANKWQR 288 H + V ++ ++ KS F +++W QH R AR + ++ R Sbjct: 613 HVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLR 659 >At4g02260.1 68417.m00307 RelA/SpoT protein, putative (RSH1) identical to RSH1 (RelA/SpoT homolog) [Arabidopsis thaliana] GI:7141304; contains Pfam profiles PF02824: TGS domain, PF01966: HD domain, PF04607: Region found in RelA / SpoT proteins Length = 884 Score = 27.9 bits (59), Expect = 5.8 Identities = 12/47 (25%), Positives = 23/47 (48%) Frame = +1 Query: 148 HFPGHGSVSDLQEFHTKGDKSTFVTYRKWTQHKFKRYAREQANKWQR 288 H + V ++ ++ KS F +++W QH R AR + ++ R Sbjct: 614 HVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLR 660 >At5g24010.1 68418.m02821 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 824 Score = 27.5 bits (58), Expect = 7.7 Identities = 16/47 (34%), Positives = 24/47 (51%) Frame = +2 Query: 149 TFPVMAQFPTYRNFIPKETNQPLLHIANGPNTNSNAMPENRQTSGNE 289 TF V+A P Y +F+ + +L I+ GP+ SN N +G E Sbjct: 343 TFHVLAS-PLYIDFVAESDRSGMLRISVGPSDLSNPARVNALLNGVE 388 >At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein low similarity to kinase [Gallus gallus] GI:1370092; contains Pfam profile PF00439: Bromodomain Length = 678 Score = 27.5 bits (58), Expect = 7.7 Identities = 14/33 (42%), Positives = 16/33 (48%) Frame = +2 Query: 188 FIPKETNQPLLHIANGPNTNSNAMPENRQTSGN 286 F+ K TNQPL N P N N P + GN Sbjct: 97 FMRKYTNQPLSGDINNPLFNPNPNPNSISAYGN 129 >At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam PF03467: Smg-4/UPF3 family; similar to hUPF3B (GI:12232324) [Homo sapiens] Length = 482 Score = 27.5 bits (58), Expect = 7.7 Identities = 10/30 (33%), Positives = 18/30 (60%) Frame = +3 Query: 159 SWLSFRPTGISYQRRQINLCYISQMDPTQI 248 +W+SFRP SY+ ++ + Y+S P + Sbjct: 37 NWVSFRPGKSSYKNQKYSRAYVSFKAPEDV 66 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 13,985,738 Number of Sequences: 28952 Number of extensions: 290293 Number of successful extensions: 797 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 767 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 797 length of database: 12,070,560 effective HSP length: 78 effective length of database: 9,812,304 effective search space used: 1265787216 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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