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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmov12f05
         (625 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g15930.1 68418.m01863 plant adhesion molecule 1 (PAM1) identi...    32   0.27 
At3g02460.2 68416.m00234 plant adhesion molecule, putative stron...    30   1.4  
At3g02460.1 68416.m00233 plant adhesion molecule, putative stron...    30   1.4  
At1g64860.1 68414.m07353 RNA polymerase sigma subunit SigA (sigA...    30   1.4  
At4g01290.1 68417.m00170 expressed protein                             28   4.4  
At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein end...    28   5.8  
At4g36040.1 68417.m05130 DNAJ heat shock N-terminal domain-conta...    28   5.8  
At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1) iden...    28   5.8  
At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1) iden...    28   5.8  
At4g02260.1 68417.m00307 RelA/SpoT protein, putative (RSH1) iden...    28   5.8  
At5g24010.1 68418.m02821 protein kinase family protein contains ...    27   7.7  
At5g10550.1 68418.m01221 DNA-binding bromodomain-containing prot...    27   7.7  
At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam...    27   7.7  

>At5g15930.1 68418.m01863 plant adhesion molecule 1 (PAM1) identical
           to plant adhesion molecule 1 [Arabidopsis thaliana]
           GI:3511223; contains Pfam profile PF00566: TBC domain
          Length = 356

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 5/60 (8%)
 Frame = +3

Query: 333 WMIVNSFARRLVEMNKRIHIQTHLH--TATRLDIIMDLRSRQPIHI---QRIQPHRKSLY 497
           W +++  +R L+ MN  +++Q  ++  +A+ LDII D+    P H+   +R  P ++SLY
Sbjct: 95  WQLISG-SRDLLLMNPGVYVQLVIYETSASELDIIRDISRTFPSHVFFQKRHGPGQRSLY 153


>At3g02460.2 68416.m00234 plant adhesion molecule, putative strong
           similarity to plant adhesion molecule 1 [Arabidopsis
           thaliana] GI:3511223; contains Pfam profile PF00566: TBC
           domain
          Length = 333

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
 Frame = +3

Query: 333 WMIVNSFARRLVEMNKRIHIQTHLH--TATRLDIIMDLRSRQPIHI---QRIQPHRKSLY 497
           W +++  +R L+ MN  ++ Q  ++  +A+ LDII D+    P H+   +R  P ++SLY
Sbjct: 98  WQLISG-SRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQKRHGPGQRSLY 156


>At3g02460.1 68416.m00233 plant adhesion molecule, putative strong
           similarity to plant adhesion molecule 1 [Arabidopsis
           thaliana] GI:3511223; contains Pfam profile PF00566: TBC
           domain
          Length = 353

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 5/60 (8%)
 Frame = +3

Query: 333 WMIVNSFARRLVEMNKRIHIQTHLH--TATRLDIIMDLRSRQPIHI---QRIQPHRKSLY 497
           W +++  +R L+ MN  ++ Q  ++  +A+ LDII D+    P H+   +R  P ++SLY
Sbjct: 98  WQLISG-SRDLLLMNPGVYEQLVIYETSASELDIIRDISRTFPSHVFFQKRHGPGQRSLY 156


>At1g64860.1 68414.m07353 RNA polymerase sigma subunit SigA (sigA) /
           sigma factor 1 (SIG1) identical to sigma factor SigA
           [Arabidopsis thaliana] GI:5478439, sigma factor 1
           [Arabidopsis thaliana] GI:2353171, plastid RNA
           polymerase sigma-subunit [Arabidopsis thaliana]
           GI:2398851; contains Pfam profiles PF04545: Sigma-70,
           region 4, PF04539: Sigma-70 region 3, PF04542: Sigma-70
           region 2
          Length = 502

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 321 TITFWMIVNSFARRLVEMNKRIHIQTHLHTATRLDIIMDLRSR 449
           T  +W I    +R LV+ ++ + + THLH   RL +I + + R
Sbjct: 313 TYVYWWIRQGVSRALVDNSRTLRLPTHLH--ERLGLIRNAKLR 353


>At4g01290.1 68417.m00170 expressed protein 
          Length = 991

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
 Frame = +1

Query: 58  VCVSKTDRLRDRRSISSEYGLSADT---GANFEHFPGHGSVSDLQEFHTKGDKSTFVTYR 228
           V VS TD      +ISS  G+S DT     +FE      + +++Q +  K +K+T    +
Sbjct: 370 VRVSSTDANERAVNISSLLGISTDTVNKDKSFEKLSSISTPTEIQGYPIKSEKATMTLGK 429

Query: 229 K 231
           K
Sbjct: 430 K 430


>At4g38990.1 68417.m05524 glycosyl hydrolase family 9 protein
           endo-1,4-beta-glucanase precursor - Fragariax ananassa,
           PID:g3549291 A short intron was annotated between exons
           4 and 5 to circumvent a frameshift.   The frameshift may
           be artificial due to a sequencing error, or
           alternatively is genuine suggesting a truncated protein
           or pseudogene.
          Length = 495

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +2

Query: 119 YQPIQGRTSNTFPVMAQFPTYRNFIPKETNQPLLHIANGP 238
           Y+P   +  NT  +     TY N++ K + QPL  ++  P
Sbjct: 331 YKPGSSQLQNTVALSFLLLTYANYLSKSSQQPLQILSTTP 370


>At4g36040.1 68417.m05130 DNAJ heat shock N-terminal
           domain-containing protein (J11) identical to dnaJ heat
           shock protein J11 [Arabidopsis thaliana] GI:9843641;
           contains Pfam profile PF00226 DnaJ domain
          Length = 161

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +2

Query: 440 SKPTAYTHPANSATPKISLLKP 505
           S PT++THP  S++P +S + P
Sbjct: 4   SSPTSFTHPFLSSSPPLSPISP 25


>At4g02260.3 68417.m00305 RelA/SpoT protein, putative (RSH1)
           identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
           thaliana] GI:7141304; contains Pfam profiles PF02824:
           TGS domain, PF01966: HD domain, PF04607: Region found in
           RelA / SpoT proteins
          Length = 816

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 148 HFPGHGSVSDLQEFHTKGDKSTFVTYRKWTQHKFKRYAREQANKWQR 288
           H   +  V ++  ++    KS F  +++W QH   R AR +  ++ R
Sbjct: 613 HVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLR 659


>At4g02260.2 68417.m00306 RelA/SpoT protein, putative (RSH1)
           identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
           thaliana] GI:7141304; contains Pfam profiles PF02824:
           TGS domain, PF01966: HD domain, PF04607: Region found in
           RelA / SpoT proteins
          Length = 883

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 148 HFPGHGSVSDLQEFHTKGDKSTFVTYRKWTQHKFKRYAREQANKWQR 288
           H   +  V ++  ++    KS F  +++W QH   R AR +  ++ R
Sbjct: 613 HVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLR 659


>At4g02260.1 68417.m00307 RelA/SpoT protein, putative (RSH1)
           identical to RSH1 (RelA/SpoT homolog) [Arabidopsis
           thaliana] GI:7141304; contains Pfam profiles PF02824:
           TGS domain, PF01966: HD domain, PF04607: Region found in
           RelA / SpoT proteins
          Length = 884

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 12/47 (25%), Positives = 23/47 (48%)
 Frame = +1

Query: 148 HFPGHGSVSDLQEFHTKGDKSTFVTYRKWTQHKFKRYAREQANKWQR 288
           H   +  V ++  ++    KS F  +++W QH   R AR +  ++ R
Sbjct: 614 HVLENAEVVEIVTYNALSSKSAFQRHKQWLQHAKTRSARHKIMRFLR 660


>At5g24010.1 68418.m02821 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 824

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 149 TFPVMAQFPTYRNFIPKETNQPLLHIANGPNTNSNAMPENRQTSGNE 289
           TF V+A  P Y +F+ +     +L I+ GP+  SN    N   +G E
Sbjct: 343 TFHVLAS-PLYIDFVAESDRSGMLRISVGPSDLSNPARVNALLNGVE 388


>At5g10550.1 68418.m01221 DNA-binding bromodomain-containing protein
           low similarity to kinase [Gallus gallus] GI:1370092;
           contains Pfam profile PF00439: Bromodomain
          Length = 678

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 14/33 (42%), Positives = 16/33 (48%)
 Frame = +2

Query: 188 FIPKETNQPLLHIANGPNTNSNAMPENRQTSGN 286
           F+ K TNQPL    N P  N N  P +    GN
Sbjct: 97  FMRKYTNQPLSGDINNPLFNPNPNPNSISAYGN 129


>At1g33980.1 68414.m04213 Smg-4/UPF3 family protein contains Pfam
           PF03467: Smg-4/UPF3 family; similar to hUPF3B
           (GI:12232324) [Homo sapiens]
          Length = 482

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +3

Query: 159 SWLSFRPTGISYQRRQINLCYISQMDPTQI 248
           +W+SFRP   SY+ ++ +  Y+S   P  +
Sbjct: 37  NWVSFRPGKSSYKNQKYSRAYVSFKAPEDV 66


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,985,738
Number of Sequences: 28952
Number of extensions: 290293
Number of successful extensions: 797
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 767
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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